Analysis of interatomic Contacts of Structural Units in PDB entry:
6GH9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GH9 entry

There are 2 chains in PDB entry 6GH9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 254	PHE 913
B	MET 254	GLY 911

There are 23 helices in PDB entry 6GH9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	270	280	Right-handed alpha
Helix 2	AA2	A	281	290	Right-handed alpha
Helix 3	AA3	A	293	297	Right-handed 310
Helix 4	AA4	A	307	321	Right-handed alpha
Helix 5	AA5	A	330	341	Right-handed alpha
Helix 6	AA6	A	354	367	Right-handed alpha
Helix 7	AA7	A	385	401	Right-handed alpha
Helix 8	AA8	A	403	410	Right-handed alpha
Helix 9	AA9	A	759	767	Right-handed alpha
Helix 10	AB1	A	833	836	Right-handed 310
Helix 11	AB2	A	887	892	Right-handed alpha
Helix 12	AB3	A	905	907	Right-handed 310
Helix 13	AB4	B	270	280	Right-handed alpha
Helix 14	AB5	B	281	290	Right-handed alpha
Helix 15	AB6	B	293	297	Right-handed 310
Helix 16	AB7	B	307	321	Right-handed alpha
Helix 17	AB8	B	330	341	Right-handed alpha
Helix 18	AB9	B	354	367	Right-handed alpha
Helix 19	AC1	B	385	401	Right-handed alpha
Helix 20	AC2	B	403	410	Right-handed alpha
Helix 21	AC3	B	759	767	Right-handed alpha
Helix 22	AC4	B	887	891	Right-handed 310
Helix 23	AC5	B	905	907	Right-handed 310

There are 11 sheets in PDB entry 6GH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	262	first strand
Strand 2	A	327	328	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	432	first strand
Strand 2	A	411	419	anti-parallel
Strand 3	A	790	797	anti-parallel
Strand 4	A	770	771	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	801	806	parallel
Strand 3	A	896	903	anti-parallel
Strand 4	A	845	857	anti-parallel
Strand 5	A	830	831	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	801	806	parallel
Strand 3	A	896	903	anti-parallel
Strand 4	A	845	857	anti-parallel
Strand 5	A	860	868	anti-parallel
Strand 6	A	875	879	anti-parallel
Strand 7	A	882	886	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	757	758	first strand
Strand 2	A	823	824	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	780	first strand
Strand 2	A	785	787	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	262	first strand
Strand 2	B	327	328	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	432	first strand
Strand 2	B	411	419	anti-parallel
Strand 3	B	790	797	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	437	first strand
Strand 2	B	801	806	parallel
Strand 3	B	896	903	anti-parallel
Strand 4	B	845	854	anti-parallel
Strand 5	B	830	831	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	437	first strand
Strand 2	B	801	806	parallel
Strand 3	B	896	903	anti-parallel
Strand 4	B	845	854	anti-parallel
Strand 5	B	863	868	anti-parallel
Strand 6	B	875	879	anti-parallel
Strand 7	B	882	886	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	756	758	first strand
Strand 2	B	822	824	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GH9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GH9