Analysis of interatomic Contacts of Structural Units in PDB entry:
6GHA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GHA entry

There is 1 chain in PDB entry 6GHA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 255PHE 912
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6GHA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
270 280Right-handed alpha
Helix 2
AA2
A
281 290Right-handed alpha
Helix 3
AA3
A
293 297Right-handed 310
Helix 4
AA4
A
307 321Right-handed alpha
Helix 5
AA5
A
330 341Right-handed alpha
Helix 6
AA6
A
355 367Right-handed alpha
Helix 7
AA7
A
385 401Right-handed alpha
Helix 8
AA8
A
403 410Right-handed alpha
Helix 9
AA9
A
759 767Right-handed alpha
Helix 10
AB1
A
833 836Right-handed 310
Helix 11
AB2
A
887 891Right-handed 310
Helix 12
AB3
A
905 907Right-handed 310
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There are 6 sheets in PDB entry 6GHA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
327 328parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 432first strand
Strand 2
A
411 418anti-parallel
Strand 3
A
790 797anti-parallel
Strand 4
A
770 771anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 437first strand
Strand 2
A
801 806parallel
Strand 3
A
896 903anti-parallel
Strand 4
A
845 855anti-parallel
Strand 5
A
830 831anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 437first strand
Strand 2
A
801 806parallel
Strand 3
A
896 903anti-parallel
Strand 4
A
845 855anti-parallel
Strand 5
A
862 868anti-parallel
Strand 6
A
875 879anti-parallel
Strand 7
A
882 885anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 758first strand
Strand 2
A
822 824parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
778 780first strand
Strand 2
A
785 787anti-parallel
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