Analysis of interatomic Contacts of Structural Units in PDB entry:
6GHB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GHB entry

There are 4 chains in PDB entry 6GHB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	ARG 124
B	ASN 23	ASP 293
C	SER 0	GLN 122
D	ASN 21	ILE 292

There are 37 helices in PDB entry 6GHB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	38	46	Right-handed alpha
Helix 3	AA3	A	47	49	Right-handed 310
Helix 4	AA4	A	75	86	Right-handed alpha
Helix 5	AA5	A	106	111	Right-handed alpha
Helix 6	AA6	A	112	114	Right-handed 310
Helix 7	AA7	B	36	42	Right-handed alpha
Helix 8	AA8	B	42	54	Right-handed alpha
Helix 9	AA9	B	78	93	Right-handed alpha
Helix 10	AB1	B	99	104	Right-handed alpha
Helix 11	AB2	B	110	121	Right-handed alpha
Helix 12	AB3	B	123	141	Right-handed alpha
Helix 13	AB4	B	147	158	Right-handed alpha
Helix 14	AB5	B	161	170	Right-handed alpha
Helix 15	AB6	B	171	188	Right-handed alpha
Helix 16	AB7	B	215	228	Right-handed alpha
Helix 17	AB8	B	238	246	Right-handed alpha
Helix 18	AB9	B	251	258	Right-handed alpha
Helix 19	AC1	B	261	275	Right-handed alpha
Helix 20	AC2	C	10	23	Right-handed alpha
Helix 21	AC3	C	38	48	Right-handed alpha
Helix 22	AC4	C	75	86	Right-handed alpha
Helix 23	AC5	C	106	111	Right-handed alpha
Helix 24	AC6	C	112	114	Right-handed 310
Helix 25	AC7	D	36	42	Right-handed alpha
Helix 26	AC8	D	42	54	Right-handed alpha
Helix 27	AC9	D	77	93	Right-handed alpha
Helix 28	AD1	D	99	104	Right-handed alpha
Helix 29	AD2	D	109	121	Right-handed alpha
Helix 30	AD3	D	123	140	Right-handed alpha
Helix 31	AD4	D	147	158	Right-handed alpha
Helix 32	AD5	D	161	170	Right-handed alpha
Helix 33	AD6	D	171	188	Right-handed alpha
Helix 34	AD7	D	215	228	Right-handed alpha
Helix 35	AD8	D	238	246	Right-handed alpha
Helix 36	AD9	D	251	259	Right-handed alpha
Helix 37	AE1	D	261	275	Right-handed alpha

There are 7 sheets in PDB entry 6GHB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	2	6	parallel
Strand 3	A	94	96	anti-parallel
Strand 4	A	101	103	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	B	207	211	parallel
Strand 3	B	195	199	anti-parallel
Strand 4	B	26	32	anti-parallel
Strand 5	B	57	63	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	250	first strand
Strand 2	B	286	291	anti-parallel
Strand 3	B	278	283	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	2	6	parallel
Strand 3	C	94	96	anti-parallel
Strand 4	C	101	103	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	120	first strand
Strand 2	D	207	211	parallel
Strand 3	D	195	199	anti-parallel
Strand 4	D	26	32	anti-parallel
Strand 5	D	57	58	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	120	first strand
Strand 2	D	207	211	parallel
Strand 3	D	195	199	anti-parallel
Strand 4	D	26	32	anti-parallel
Strand 5	D	61	63	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	250	first strand
Strand 2	D	286	291	anti-parallel
Strand 3	D	278	283	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GHB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GHB