Analysis of interatomic Contacts of Structural Units in PDB entry:
6GHC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GHC entry

There are 2 chains in PDB entry 6GHC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -5LYS 277
B
 GLY -8LYS 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6GHC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 54Right-handed alpha
Helix 2
AA2
A
65 72Right-handed alpha
Helix 3
AA3
A
74 79Right-handed alpha
Helix 4
AA4
A
92 105Right-handed alpha
Helix 5
AA5
A
133 143Right-handed alpha
Helix 6
AA6
A
144 149Right-handed alpha
Helix 7
AA7
A
154 168Right-handed alpha
Helix 8
AA8
A
192 204Right-handed alpha
Helix 9
AA9
A
240 242Right-handed 310
Helix 10
AB1
A
248 258Right-handed alpha
Helix 11
AB2
A
260 272Right-handed alpha
Helix 12
AB3
B
39 54Right-handed alpha
Helix 13
AB4
B
65 72Right-handed alpha
Helix 14
AB5
B
74 79Right-handed alpha
Helix 15
AB6
B
92 104Right-handed alpha
Helix 16
AB7
B
133 143Right-handed alpha
Helix 17
AB8
B
154 166Right-handed alpha
Helix 18
AB9
B
192 204Right-handed alpha
Helix 19
AC1
B
240 242Right-handed 310
Helix 20
AC2
B
248 258Right-handed alpha
Helix 21
AC3
B
260 272Right-handed alpha
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There are 6 sheets in PDB entry 6GHC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-2 4first strand
Strand 2
A
10 20anti-parallel
Strand 3
A
23 28anti-parallel
Strand 4
A
124 127anti-parallel
Strand 5
A
58 63anti-parallel
Strand 6
A
86 87anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 189first strand
Strand 2
B
181 189anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
222 223anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
244 247anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 4first strand
Strand 2
B
10 20anti-parallel
Strand 3
B
23 28anti-parallel
Strand 4
B
124 127anti-parallel
Strand 5
B
58 63anti-parallel
Strand 6
B
86 87anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 229first strand
Strand 2
B
244 247anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il