Analysis of interatomic Contacts of Structural Units in PDB entry:
6GHF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GHF entry

There are 2 chains in PDB entry 6GHF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 6PHE 213
A
 GLU 6ALA 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 6GHF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
16 29Right-handed alpha
Helix 2
AA2
B
44 49Right-handed alpha
Helix 3
AA3
B
69 79Right-handed alpha
Helix 4
AA4
B
90 108Right-handed alpha
Helix 5
AA5
B
109 114Right-handed 310
Helix 6
AA6
B
118 124Right-handed alpha
Helix 7
AA7
B
126 135Right-handed alpha
Helix 8
AA8
B
153 159Right-handed alpha
Helix 9
AA9
B
159 164Right-handed alpha
Helix 10
AB1
B
169 174Right-handed alpha
Helix 11
AB2
B
183 188Right-handed alpha
Helix 12
AB3
B
189 194Right-handed 310
Helix 13
AB4
B
198 203Right-handed alpha
Helix 14
AB5
B
205 213Right-handed alpha
Helix 15
AB6
A
16 29Right-handed alpha
Helix 16
AB7
A
44 49Right-handed alpha
Helix 17
AB8
A
69 81Right-handed alpha
Helix 18
AB9
A
90 108Right-handed alpha
Helix 19
AC1
A
109 111Right-handed 310
Helix 20
AC2
A
119 124Right-handed alpha
Helix 21
AC3
A
126 140Right-handed alpha
Helix 22
AC4
A
153 159Right-handed alpha
Helix 23
AC5
A
159 164Right-handed alpha
Helix 24
AC6
A
164 170Right-handed alpha
Helix 25
AC7
A
183 191Right-handed alpha
Helix 26
AC8
A
198 203Right-handed alpha
Helix 27
AC9
A
205 214Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6GHF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
9 12parallel
Strand 3
B
59 62anti-parallel
Strand 4
B
65 68anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
9 11parallel
Strand 3
A
59 62anti-parallel
Strand 4
A
65 68anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il