Analysis of interatomic Contacts of Structural Units in PDB entry:
6GHO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GHO entry

There are 2 chains in PDB entry 6GHO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLU 125
B
 ASN 21ASP 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6GHO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
38 47Right-handed alpha
Helix 3
AA3
A
61 68Right-handed alpha
Helix 4
AA4
A
75 86Right-handed alpha
Helix 5
AA5
A
87 90Right-handed 310
Helix 6
AA6
A
108 114Right-handed 310
Helix 7
AA7
B
36 42Right-handed alpha
Helix 8
AA8
B
42 54Right-handed alpha
Helix 9
AA9
B
66 76Right-handed alpha
Helix 10
AB1
B
77 93Right-handed alpha
Helix 11
AB2
B
99 104Right-handed alpha
Helix 12
AB3
B
110 121Right-handed alpha
Helix 13
AB4
B
123 142Right-handed alpha
Helix 14
AB5
B
147 158Right-handed alpha
Helix 15
AB6
B
161 170Right-handed alpha
Helix 16
AB7
B
171 188Right-handed alpha
Helix 17
AB8
B
215 228Right-handed alpha
Helix 18
AB9
B
238 247Right-handed alpha
Helix 19
AC1
B
251 259Right-handed alpha
Helix 20
AC2
B
261 275Right-handed alpha
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There are 3 sheets in PDB entry 6GHO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
2 6parallel
Strand 3
A
94 96anti-parallel
Strand 4
A
101 103anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
B
207 211parallel
Strand 3
B
195 199anti-parallel
Strand 4
B
26 32anti-parallel
Strand 5
B
57 63parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
287 291anti-parallel
Strand 3
B
278 282anti-parallel
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