Analysis of interatomic Contacts of Structural Units in PDB entry:
6GHR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GHR entry

There are 6 chains in PDB entry 6GHR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL -4	ALA 337
C	SER 0	ALA 337
E	THR 55	ASP 75
F	MET 1	ASP 75
D	SER 0	ALA 337
A	SER 0	ARG 198

There are 59 helices in PDB entry 6GHR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	10	24	Right-handed alpha
Helix 2	AA2	B	25	27	Right-handed 310
Helix 3	AA3	B	39	48	Right-handed alpha
Helix 4	AA4	B	82	86	Right-handed 310
Helix 5	AA5	B	105	116	Right-handed alpha
Helix 6	AA6	B	138	142	Right-handed 310
Helix 7	AA7	B	153	171	Right-handed alpha
Helix 8	AA8	B	202	206	Right-handed 310
Helix 9	AA9	B	213	222	Right-handed alpha
Helix 10	AB1	B	223	226	Right-handed 310
Helix 11	AB2	B	255	269	Right-handed alpha
Helix 12	AB3	B	283	288	Right-handed 310
Helix 13	AB4	B	299	301	Right-handed 310
Helix 14	AB5	B	318	335	Right-handed alpha
Helix 15	AB6	C	10	23	Right-handed alpha
Helix 16	AB7	C	24	27	Right-handed 310
Helix 17	AB8	C	39	49	Right-handed alpha
Helix 18	AB9	C	82	86	Right-handed 310
Helix 19	AC1	C	105	116	Right-handed alpha
Helix 20	AC2	C	138	142	Right-handed 310
Helix 21	AC3	C	153	171	Right-handed alpha
Helix 22	AC4	C	202	206	Right-handed 310
Helix 23	AC5	C	213	222	Right-handed alpha
Helix 24	AC6	C	223	226	Right-handed 310
Helix 25	AC7	C	255	269	Right-handed alpha
Helix 26	AC8	C	283	288	Right-handed 310
Helix 27	AC9	C	299	301	Right-handed 310
Helix 28	AD1	C	318	335	Right-handed alpha
Helix 29	AD2	E	56	64	Right-handed alpha
Helix 30	AD3	F	3	20	Right-handed alpha
Helix 31	AD4	F	28	53	Right-handed alpha
Helix 32	AD5	F	55	64	Right-handed alpha
Helix 33	AD6	D	10	23	Right-handed alpha
Helix 34	AD7	D	24	27	Right-handed 310
Helix 35	AD8	D	39	49	Right-handed alpha
Helix 36	AD9	D	82	86	Right-handed 310
Helix 37	AE1	D	105	116	Right-handed alpha
Helix 38	AE2	D	138	142	Right-handed 310
Helix 39	AE3	D	153	171	Right-handed alpha
Helix 40	AE4	D	202	206	Right-handed 310
Helix 41	AE5	D	213	222	Right-handed alpha
Helix 42	AE6	D	223	226	Right-handed 310
Helix 43	AE7	D	255	269	Right-handed alpha
Helix 44	AE8	D	283	288	Right-handed 310
Helix 45	AE9	D	299	301	Right-handed 310
Helix 46	AF1	D	318	335	Right-handed alpha
Helix 47	AF2	A	10	23	Right-handed alpha
Helix 48	AF3	A	39	48	Right-handed alpha
Helix 49	AF4	A	82	86	Right-handed 310
Helix 50	AF5	A	105	116	Right-handed alpha
Helix 51	AF6	A	138	142	Right-handed 310
Helix 52	AF7	A	153	171	Right-handed alpha
Helix 53	AF8	A	202	206	Right-handed 310
Helix 54	AF9	A	217	222	Right-handed alpha
Helix 55	AG1	A	223	226	Right-handed 310
Helix 56	AG2	A	255	269	Right-handed alpha
Helix 57	AG3	A	283	288	Right-handed 310
Helix 58	AG4	A	299	301	Right-handed 310
Helix 59	AG5	A	318	335	Right-handed alpha

There are 14 sheets in PDB entry 6GHR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	67	70	anti-parallel
Strand 3	B	73	78	anti-parallel
Strand 4	B	29	35	parallel
Strand 5	B	2	7	parallel
Strand 6	B	95	98	parallel
Strand 7	B	119	122	parallel
Strand 8	B	148	150	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	54	55	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	229	236	anti-parallel
Strand 3	B	172	182	parallel
Strand 4	B	242	250	anti-parallel
Strand 5	B	308	315	anti-parallel
Strand 6	B	294	297	anti-parallel
Strand 7	B	275	278	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	229	236	anti-parallel
Strand 3	B	172	182	parallel
Strand 4	B	242	250	anti-parallel
Strand 5	B	308	315	anti-parallel
Strand 6	B	302	304	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	63	first strand
Strand 2	C	67	70	anti-parallel
Strand 3	C	73	78	anti-parallel
Strand 4	C	29	35	parallel
Strand 5	C	2	7	parallel
Strand 6	C	95	98	parallel
Strand 7	C	119	122	parallel
Strand 8	C	148	150	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	229	236	anti-parallel
Strand 3	C	172	182	parallel
Strand 4	C	242	250	anti-parallel
Strand 5	C	308	315	anti-parallel
Strand 6	C	294	297	anti-parallel
Strand 7	C	275	278	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	229	236	anti-parallel
Strand 3	C	172	182	parallel
Strand 4	C	242	250	anti-parallel
Strand 5	C	308	315	anti-parallel
Strand 6	C	302	304	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	63	first strand
Strand 2	D	67	70	anti-parallel
Strand 3	D	73	78	anti-parallel
Strand 4	D	29	35	parallel
Strand 5	D	2	7	parallel
Strand 6	D	95	98	parallel
Strand 7	D	119	122	parallel
Strand 8	D	148	150	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	229	236	anti-parallel
Strand 3	D	172	182	parallel
Strand 4	D	242	250	anti-parallel
Strand 5	D	308	315	anti-parallel
Strand 6	D	294	297	anti-parallel
Strand 7	D	275	278	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	229	236	anti-parallel
Strand 3	D	172	182	parallel
Strand 4	D	242	250	anti-parallel
Strand 5	D	308	315	anti-parallel
Strand 6	D	302	304	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	67	70	anti-parallel
Strand 3	A	73	78	anti-parallel
Strand 4	A	29	35	parallel
Strand 5	A	2	7	parallel
Strand 6	A	95	98	parallel
Strand 7	A	119	122	parallel
Strand 8	A	148	150	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	54	55	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	211	first strand
Strand 2	A	229	236	anti-parallel
Strand 3	A	172	182	parallel
Strand 4	A	242	250	anti-parallel
Strand 5	A	308	315	anti-parallel
Strand 6	A	294	297	anti-parallel
Strand 7	A	275	278	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	211	first strand
Strand 2	A	229	236	anti-parallel
Strand 3	A	172	182	parallel
Strand 4	A	242	250	anti-parallel
Strand 5	A	308	315	anti-parallel
Strand 6	A	302	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GHR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GHR