Analysis of interatomic Contacts of Structural Units in PDB entry:
6GHT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GHT entry

There is 1 chain in PDB entry 6GHT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6GHT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 40Right-handed alpha
Helix 2
AA2
A
51 61Right-handed alpha
Helix 3
AA3
A
70 82Right-handed alpha
Helix 4
AA4
A
132 142Right-handed alpha
Helix 5
AA5
A
145 150Right-handed alpha
Helix 6
AA6
A
157 167Right-handed alpha
Helix 7
AA7
A
177 186Right-handed alpha
Helix 8
AA8
A
190 192Right-handed 310
Helix 9
AA9
A
215 228Right-handed alpha
Helix 10
AB1
A
230 237Right-handed alpha
Helix 11
AB2
A
247 250Right-handed 310
Helix 12
AB3
A
251 261Right-handed alpha
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There are 4 sheets in PDB entry 6GHT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
8 15anti-parallel
Strand 3
A
43 47parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
8 15anti-parallel
Strand 3
A
66 69parallel
Strand 4
A
207 210anti-parallel
Strand 5
A
84 91anti-parallel
Strand 6
A
242 245anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
203 204anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
120 122parallel
Strand 3
A
172 176parallel
Strand 4
A
99 104anti-parallel
Strand 5
A
194 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il