Analysis of interatomic Contacts of Structural Units in PDB entry:
6GHV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GHV entry

There are 6 chains in PDB entry 6GHV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 253	CYS 384
B	CYS 253	CYS 384
C	LEU 252	CYS 384
D	LEU 252	CYS 384
E	LEU 252	CYS 384
F	CYS 253	CYS 384

There are 18 helices in PDB entry 6GHV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	276	286	Right-handed alpha
Helix 2	AA2	A	296	311	Right-handed alpha
Helix 3	AA3	A	336	343	Right-handed 310
Helix 4	AA4	B	276	287	Right-handed alpha
Helix 5	AA5	B	296	311	Right-handed alpha
Helix 6	AA6	B	336	343	Right-handed 310
Helix 7	AA7	C	276	287	Right-handed alpha
Helix 8	AA8	C	296	311	Right-handed alpha
Helix 9	AA9	C	336	343	Right-handed 310
Helix 10	AB1	D	276	286	Right-handed alpha
Helix 11	AB2	D	296	311	Right-handed alpha
Helix 12	AB3	D	336	343	Right-handed 310
Helix 13	AB4	E	276	286	Right-handed alpha
Helix 14	AB5	E	296	311	Right-handed alpha
Helix 15	AB6	E	336	343	Right-handed 310
Helix 16	AB7	F	276	286	Right-handed alpha
Helix 17	AB8	F	296	311	Right-handed alpha
Helix 18	AB9	F	336	343	Right-handed 310

There are 12 sheets in PDB entry 6GHV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	266	270	anti-parallel
Strand 3	A	374	380	anti-parallel
Strand 4	A	314	319	parallel
Strand 5	A	328	329	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	374	380	anti-parallel
Strand 3	A	314	319	parallel
Strand 4	A	356	360	anti-parallel
Strand 5	A	363	367	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	263	first strand
Strand 2	B	266	270	anti-parallel
Strand 3	B	374	380	anti-parallel
Strand 4	B	314	319	parallel
Strand 5	B	328	329	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	291	first strand
Strand 2	B	374	380	anti-parallel
Strand 3	B	314	319	parallel
Strand 4	B	356	360	anti-parallel
Strand 5	B	363	367	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	263	first strand
Strand 2	C	266	270	anti-parallel
Strand 3	C	374	380	anti-parallel
Strand 4	C	314	323	parallel
Strand 5	C	326	329	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	291	first strand
Strand 2	C	374	380	anti-parallel
Strand 3	C	314	323	parallel
Strand 4	C	356	360	anti-parallel
Strand 5	C	363	367	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	263	first strand
Strand 2	D	266	270	anti-parallel
Strand 3	D	374	380	anti-parallel
Strand 4	D	314	319	parallel
Strand 5	D	328	329	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	291	first strand
Strand 2	D	374	380	anti-parallel
Strand 3	D	314	319	parallel
Strand 4	D	356	360	anti-parallel
Strand 5	D	363	367	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	261	263	first strand
Strand 2	E	266	270	anti-parallel
Strand 3	E	374	380	anti-parallel
Strand 4	E	314	323	parallel
Strand 5	E	326	329	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	290	291	first strand
Strand 2	E	374	380	anti-parallel
Strand 3	E	314	323	parallel
Strand 4	E	356	360	anti-parallel
Strand 5	E	363	367	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	261	263	first strand
Strand 2	F	266	270	anti-parallel
Strand 3	F	374	380	anti-parallel
Strand 4	F	314	319	parallel
Strand 5	F	328	329	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	290	291	first strand
Strand 2	F	374	380	anti-parallel
Strand 3	F	314	319	parallel
Strand 4	F	356	360	anti-parallel
Strand 5	F	363	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GHV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GHV