Analysis of interatomic Contacts of Structural Units in PDB entry:
6GIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GIB entry

There are 2 chains in PDB entry 6GIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 3ARG 236
B
 CYS 3ALA 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6GIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
44 50Right-handed 310
Helix 3
AA3
A
80 92Right-handed alpha
Helix 4
AA4
A
93 96Right-handed 310
Helix 5
AA5
A
101 119Right-handed alpha
Helix 6
AA6
A
119 129Right-handed alpha
Helix 7
AA7
A
133 146Right-handed alpha
Helix 8
AA8
A
158 178Right-handed alpha
Helix 9
AA9
A
183 196Right-handed alpha
Helix 10
AB1
A
199 211Right-handed alpha
Helix 11
AB2
A
212 220Right-handed alpha
Helix 12
AB3
A
221 230Right-handed alpha
Helix 13
AB4
A
231 236Right-handed 310
Helix 14
AB5
B
15 29Right-handed alpha
Helix 15
AB6
B
44 50Right-handed 310
Helix 16
AB7
B
80 92Right-handed alpha
Helix 17
AB8
B
93 96Right-handed 310
Helix 18
AB9
B
101 118Right-handed alpha
Helix 19
AC1
B
118 128Right-handed alpha
Helix 20
AC2
B
133 146Right-handed alpha
Helix 21
AC3
B
158 178Right-handed alpha
Helix 22
AC4
B
183 196Right-handed alpha
Helix 23
AC5
B
199 212Right-handed alpha
Helix 24
AC6
B
212 220Right-handed alpha
Helix 25
AC7
B
221 231Right-handed alpha
Helix 26
AC8
B
232 236Right-handed 310
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There are 2 sheets in PDB entry 6GIB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
7 12parallel
Strand 3
A
58 61anti-parallel
Strand 4
A
76 79anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 37first strand
Strand 2
B
7 12parallel
Strand 3
B
58 61anti-parallel
Strand 4
B
76 79anti-parallel
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