Analysis of interatomic Contacts of Structural Units in PDB entry:
6GII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GII entry

There is 1 chain in PDB entry 6GII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 62ARG 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6GII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 69Right-handed alpha
Helix 2
AA2
A
73 79Right-handed alpha
Helix 3
AA3
A
79 84Right-handed alpha
Helix 4
AA4
A
84 91Right-handed alpha
Helix 5
AA5
A
106 115Right-handed alpha
Helix 6
AA6
A
133 143Right-handed alpha
Helix 7
AA7
A
150 154Right-handed 310
Helix 8
AA8
A
157 167Right-handed alpha
Helix 9
AA9
A
168 173Right-handed 310
Helix 10
AB1
A
174 194Right-handed alpha
Helix 11
AB2
A
201 205Right-handed alpha
Helix 12
AB3
A
207 219Right-handed alpha
Helix 13
AB4
A
221 228Right-handed alpha
Helix 14
AB5
A
229 232Right-handed 310
Helix 15
AB6
A
235 241Right-handed alpha
Helix 16
AB7
A
244 272Right-handed alpha
Helix 17
AB8
A
277 289Right-handed alpha
Helix 18
AB9
A
294 310Right-handed alpha
Helix 19
AC1
A
310 327Right-handed alpha
Helix 20
AC2
A
327 337Right-handed alpha
Helix 21
AC3
A
340 353Right-handed alpha
Helix 22
AC4
A
382 388Right-handed alpha
Helix 23
AC5
A
405 409Right-handed 310
Helix 24
AC6
A
421 440Right-handed alpha
Helix 25
AC7
A
469 477Right-handed 310
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There are 3 sheets in PDB entry 6GII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
101 104anti-parallel
Strand 3
A
378 381parallel
Strand 4
A
358 362anti-parallel
Strand 5
A
120 121anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
465 467anti-parallel
Strand 3
A
444 445anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 368first strand
Strand 2
A
371 373anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il