Analysis of interatomic Contacts of Structural Units in PDB entry:
6GIO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GIO entry

There are 4 chains in PDB entry 6GIO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	LEU 5	MET 438
A	LEU 5	MET 437
B	THR 3	MET 437
C	GLN 2	MET 437

There are 76 helices in PDB entry 6GIO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	6	15	Right-handed alpha
Helix 2	AA2	D	16	20	Right-handed 310
Helix 3	AA3	D	48	52	Right-handed 310
Helix 4	AA4	D	60	73	Right-handed alpha
Helix 5	AA5	D	84	98	Right-handed alpha
Helix 6	AA6	D	111	128	Right-handed alpha
Helix 7	AA7	D	143	149	Right-handed alpha
Helix 8	AA8	D	152	156	Right-handed 310
Helix 9	AA9	D	178	191	Right-handed alpha
Helix 10	AB1	D	195	197	Right-handed 310
Helix 11	AB2	D	219	231	Right-handed alpha
Helix 12	AB3	D	251	256	Right-handed 310
Helix 13	AB4	D	266	271	Right-handed 310
Helix 14	AB5	D	282	286	Right-handed alpha
Helix 15	AB6	D	299	316	Right-handed alpha
Helix 16	AB7	D	317	337	Right-handed alpha
Helix 17	AB8	D	368	383	Right-handed alpha
Helix 18	AB9	D	405	425	Right-handed alpha
Helix 19	AC1	D	429	435	Right-handed alpha
Helix 20	AC2	A	6	15	Right-handed alpha
Helix 21	AC3	A	16	20	Right-handed 310
Helix 22	AC4	A	48	52	Right-handed 310
Helix 23	AC5	A	60	73	Right-handed alpha
Helix 24	AC6	A	84	98	Right-handed alpha
Helix 25	AC7	A	111	128	Right-handed alpha
Helix 26	AC8	A	143	148	Right-handed alpha
Helix 27	AC9	A	152	156	Right-handed 310
Helix 28	AD1	A	178	192	Right-handed alpha
Helix 29	AD2	A	195	197	Right-handed 310
Helix 30	AD3	A	219	230	Right-handed alpha
Helix 31	AD4	A	251	256	Right-handed 310
Helix 32	AD5	A	266	271	Right-handed 310
Helix 33	AD6	A	282	286	Right-handed alpha
Helix 34	AD7	A	299	316	Right-handed alpha
Helix 35	AD8	A	317	337	Right-handed alpha
Helix 36	AD9	A	368	383	Right-handed alpha
Helix 37	AE1	A	405	425	Right-handed alpha
Helix 38	AE2	A	429	435	Right-handed alpha
Helix 39	AE3	B	6	15	Right-handed alpha
Helix 40	AE4	B	16	20	Right-handed 310
Helix 41	AE5	B	48	52	Right-handed 310
Helix 42	AE6	B	60	73	Right-handed alpha
Helix 43	AE7	B	84	98	Right-handed alpha
Helix 44	AE8	B	111	128	Right-handed alpha
Helix 45	AE9	B	143	148	Right-handed alpha
Helix 46	AF1	B	152	156	Right-handed 310
Helix 47	AF2	B	178	192	Right-handed alpha
Helix 48	AF3	B	195	197	Right-handed 310
Helix 49	AF4	B	219	230	Right-handed alpha
Helix 50	AF5	B	251	256	Right-handed 310
Helix 51	AF6	B	266	271	Right-handed 310
Helix 52	AF7	B	282	286	Right-handed alpha
Helix 53	AF8	B	299	316	Right-handed alpha
Helix 54	AF9	B	317	340	Right-handed alpha
Helix 55	AG1	B	368	383	Right-handed alpha
Helix 56	AG2	B	405	425	Right-handed alpha
Helix 57	AG3	B	430	435	Right-handed alpha
Helix 58	AG4	C	6	15	Right-handed alpha
Helix 59	AG5	C	16	20	Right-handed 310
Helix 60	AG6	C	48	52	Right-handed 310
Helix 61	AG7	C	60	73	Right-handed alpha
Helix 62	AG8	C	84	98	Right-handed alpha
Helix 63	AG9	C	111	128	Right-handed alpha
Helix 64	AH1	C	143	149	Right-handed alpha
Helix 65	AH2	C	152	156	Right-handed 310
Helix 66	AH3	C	178	192	Right-handed alpha
Helix 67	AH4	C	195	197	Right-handed 310
Helix 68	AH5	C	219	230	Right-handed alpha
Helix 69	AH6	C	251	256	Right-handed 310
Helix 70	AH7	C	266	271	Right-handed 310
Helix 71	AH8	C	282	286	Right-handed alpha
Helix 72	AH9	C	299	316	Right-handed alpha
Helix 73	AI1	C	317	340	Right-handed alpha
Helix 74	AI2	C	368	382	Right-handed alpha
Helix 75	AI3	C	405	425	Right-handed alpha
Helix 76	AI4	C	429	437	Right-handed 310

There are 13 sheets in PDB entry 6GIO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	32	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	43	46	anti-parallel
Strand 4	D	384	385	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	109	first strand
Strand 2	D	276	281	anti-parallel
Strand 3	D	262	265	anti-parallel
Strand 4	D	234	238	parallel
Strand 5	D	199	204	parallel
Strand 6	D	131	135	parallel
Strand 7	D	164	167	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	349	first strand
Strand 2	D	352	360	anti-parallel
Strand 3	D	365	366	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	349	first strand
Strand 2	D	352	360	anti-parallel
Strand 3	D	395	398	anti-parallel
Strand 4	D	387	389	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	43	46	anti-parallel
Strand 4	A	384	385	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	109	first strand
Strand 2	A	276	281	anti-parallel
Strand 3	A	262	265	anti-parallel
Strand 4	A	234	238	parallel
Strand 5	A	199	204	parallel
Strand 6	A	131	135	parallel
Strand 7	A	164	167	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	349	first strand
Strand 2	A	352	357	anti-parallel
Strand 3	A	395	398	anti-parallel
Strand 4	A	387	389	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	32	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	43	46	anti-parallel
Strand 4	B	384	385	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	109	first strand
Strand 2	B	276	281	anti-parallel
Strand 3	B	262	265	anti-parallel
Strand 4	B	234	238	parallel
Strand 5	B	199	204	parallel
Strand 6	B	131	135	parallel
Strand 7	B	164	167	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	349	first strand
Strand 2	B	352	357	anti-parallel
Strand 3	B	395	398	anti-parallel
Strand 4	B	387	389	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	43	46	anti-parallel
Strand 4	C	384	385	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	109	first strand
Strand 2	C	276	281	anti-parallel
Strand 3	C	262	265	anti-parallel
Strand 4	C	234	238	parallel
Strand 5	C	199	204	parallel
Strand 6	C	131	135	parallel
Strand 7	C	164	167	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	349	first strand
Strand 2	C	352	357	anti-parallel
Strand 3	C	395	398	anti-parallel
Strand 4	C	387	389	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GIO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GIO