Analysis of interatomic Contacts of Structural Units in PDB entry:
6GIQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GIQ entry

There are 32 chains in PDB entry 6GIQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	TRP 457
B	LEU 17	LEU 368
C	MET 1	LYS 385
D	MET 62	LYS 309
E	LYS 31	GLY 215
F	VAL 74	LYS 147
G	PRO 2	LYS 127
H	GLY 2	VAL 94
I	SER 5	ALA 58
L	ALA 27	TRP 457
M	LEU 17	LEU 368
N	MET 1	LYS 385
O	MET 62	LYS 309
P	LYS 31	GLY 215
Q	GLU 73	LYS 147
R	PRO 2	LYS 127
S	GLY 2	VAL 94
T	SER 4	ALA 57
U	LYS 10	ASP 53
V	THR 11	LEU 61
a	ASP 13	SER 534
b	ASP 16	GLU 250
c	ARG 8	VAL 269
d	ASP 59	ARG 107
e	VAL 31	LYS 126
f	GLU 47	PRO 145
g	SER 26	GLY 54
h	GLY 44	LYS 74
i	THR 7	LYS 55
j	THR 24	ILE 80
k	TRP 57	GLU 74
m	UNK 5	UNK 35

There are219 helices in PDB entry 6GIQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	62	Right-handed 310
Helix 2	AA2	A	68	78	Right-handed alpha
Helix 3	AA3	A	79	89	Right-handed alpha
Helix 4	AA4	A	112	125	Right-handed alpha
Helix 5	AA5	A	133	155	Right-handed alpha
Helix 6	AA6	A	155	169	Right-handed alpha
Helix 7	AA7	A	172	176	Right-handed 310
Helix 8	AA8	A	181	186	Right-handed alpha
Helix 9	AA9	A	189	201	Right-handed alpha
Helix 10	AB1	A	215	226	Right-handed alpha
Helix 11	AB2	A	274	286	Right-handed alpha
Helix 12	AB3	A	302	307	Right-handed alpha
Helix 13	AB4	A	339	357	Right-handed alpha
Helix 14	AB5	A	359	379	Right-handed alpha
Helix 15	AB6	A	382	397	Right-handed alpha
Helix 16	AB7	A	402	412	Right-handed alpha
Helix 17	AB8	A	414	426	Right-handed alpha
Helix 18	AB9	A	444	451	Right-handed alpha
Helix 19	AC1	B	38	42	Right-handed 310
Helix 20	AC2	B	46	55	Right-handed alpha
Helix 21	AC3	B	63	75	Right-handed alpha
Helix 22	AC4	B	97	111	Right-handed alpha
Helix 23	AC5	B	115	122	Right-handed alpha
Helix 24	AC6	B	123	136	Right-handed alpha
Helix 25	AC7	B	137	151	Right-handed alpha
Helix 26	AC8	B	168	180	Right-handed alpha
Helix 27	AC9	B	181	183	Right-handed 310
Helix 28	AD1	B	193	204	Right-handed alpha
Helix 29	AD2	B	205	209	Right-handed 310
Helix 30	AD3	B	249	262	Right-handed alpha
Helix 31	AD4	B	293	311	Right-handed alpha
Helix 32	AD5	B	317	329	Right-handed alpha
Helix 33	AD6	B	339	343	Right-handed 310
Helix 34	AD7	B	358	362	Right-handed 310
Helix 35	AD8	B	364	368	Right-handed 310
Helix 36	AD9	C	2	7	Right-handed alpha
Helix 37	AE1	C	7	18	Right-handed alpha
Helix 38	AE2	C	27	30	Right-handed 310
Helix 39	AE3	C	31	52	Right-handed alpha
Helix 40	AE4	C	60	71	Right-handed alpha
Helix 41	AE5	C	74	103	Right-handed alpha
Helix 42	AE6	C	110	134	Right-handed alpha
Helix 43	AE7	C	137	152	Right-handed alpha
Helix 44	AE8	C	157	167	Right-handed alpha
Helix 45	AE9	C	172	203	Right-handed alpha
Helix 46	AF1	C	223	246	Right-handed alpha
Helix 47	AF2	C	253	258	Right-handed 310
Helix 48	AF3	C	272	274	Right-handed 310
Helix 49	AF4	C	275	285	Right-handed alpha
Helix 50	AF5	C	287	301	Right-handed alpha
Helix 51	AF6	C	319	341	Right-handed alpha
Helix 52	AF7	C	347	365	Right-handed alpha
Helix 53	AF8	C	365	383	Right-handed alpha
Helix 54	AF9	D	63	68	Right-handed alpha
Helix 55	AG1	D	86	100	Right-handed alpha
Helix 56	AG2	D	101	104	Right-handed 310
Helix 57	AG3	D	111	116	Right-handed 310
Helix 58	AG4	D	121	130	Right-handed alpha
Helix 59	AG5	D	161	169	Right-handed alpha
Helix 60	AG6	D	187	196	Right-handed alpha
Helix 61	AG7	D	243	260	Right-handed alpha
Helix 62	AG8	D	262	292	Right-handed alpha
Helix 63	AG9	D	292	297	Right-handed alpha
Helix 64	AH1	E	50	81	Right-handed alpha
Helix 65	AH2	E	85	91	Right-handed alpha
Helix 66	AH3	E	122	130	Right-handed alpha
Helix 67	AH4	E	133	137	Right-handed 310
Helix 68	AH5	F	76	87	Right-handed alpha
Helix 69	AH6	F	88	110	Right-handed alpha
Helix 70	AH7	F	123	142	Right-handed alpha
Helix 71	AH8	G	4	18	Right-handed alpha
Helix 72	AH9	G	18	37	Right-handed alpha
Helix 73	AI1	G	44	48	Right-handed 310
Helix 74	AI2	G	53	62	Right-handed alpha
Helix 75	AI3	G	64	84	Right-handed alpha
Helix 76	AI4	G	89	93	Right-handed 310
Helix 77	AI5	G	103	122	Right-handed alpha
Helix 78	AI6	H	42	54	Right-handed alpha
Helix 79	AI7	H	56	81	Right-handed alpha
Helix 80	AI8	H	85	94	Right-handed alpha
Helix 81	AI9	I	7	13	Right-handed alpha
Helix 82	AJ1	I	13	44	Right-handed alpha
Helix 83	AJ2	I	48	56	Right-handed alpha
Helix 84	AJ3	L	58	62	Right-handed 310
Helix 85	AJ4	L	68	78	Right-handed alpha
Helix 86	AJ5	L	79	89	Right-handed alpha
Helix 87	AJ6	L	112	125	Right-handed alpha
Helix 88	AJ7	L	133	155	Right-handed alpha
Helix 89	AJ8	L	155	169	Right-handed alpha
Helix 90	AJ9	L	172	176	Right-handed 310
Helix 91	AK1	L	181	186	Right-handed alpha
Helix 92	AK2	L	189	201	Right-handed alpha
Helix 93	AK3	L	215	226	Right-handed alpha
Helix 94	AK4	L	274	286	Right-handed alpha
Helix 95	AK5	L	302	307	Right-handed alpha
Helix 96	AK6	L	339	357	Right-handed alpha
Helix 97	AK7	L	359	379	Right-handed alpha
Helix 98	AK8	L	382	397	Right-handed alpha
Helix 99	AK9	L	402	412	Right-handed alpha
Helix 100	AL1	L	414	426	Right-handed alpha
Helix 101	AL2	L	444	451	Right-handed alpha
Helix 102	AL3	M	38	42	Right-handed 310
Helix 103	AL4	M	46	55	Right-handed alpha
Helix 104	AL5	M	63	75	Right-handed alpha
Helix 105	AL6	M	97	111	Right-handed alpha
Helix 106	AL7	M	115	122	Right-handed alpha
Helix 107	AL8	M	123	136	Right-handed alpha
Helix 108	AL9	M	137	151	Right-handed alpha
Helix 109	AM1	M	168	180	Right-handed alpha
Helix 110	AM2	M	181	183	Right-handed 310
Helix 111	AM3	M	193	204	Right-handed alpha
Helix 112	AM4	M	205	209	Right-handed 310
Helix 113	AM5	M	249	262	Right-handed alpha
Helix 114	AM6	M	293	311	Right-handed alpha
Helix 115	AM7	M	317	329	Right-handed alpha
Helix 116	AM8	M	339	343	Right-handed 310
Helix 117	AM9	M	358	362	Right-handed 310
Helix 118	AN1	M	364	368	Right-handed 310
Helix 119	AN2	N	2	7	Right-handed alpha
Helix 120	AN3	N	7	18	Right-handed alpha
Helix 121	AN4	N	27	30	Right-handed 310
Helix 122	AN5	N	31	52	Right-handed alpha
Helix 123	AN6	N	60	71	Right-handed alpha
Helix 124	AN7	N	74	103	Right-handed alpha
Helix 125	AN8	N	110	134	Right-handed alpha
Helix 126	AN9	N	137	152	Right-handed alpha
Helix 127	AO1	N	157	167	Right-handed alpha
Helix 128	AO2	N	172	203	Right-handed alpha
Helix 129	AO3	N	223	246	Right-handed alpha
Helix 130	AO4	N	253	258	Right-handed 310
Helix 131	AO5	N	272	274	Right-handed 310
Helix 132	AO6	N	275	285	Right-handed alpha
Helix 133	AO7	N	287	301	Right-handed alpha
Helix 134	AO8	N	319	341	Right-handed alpha
Helix 135	AO9	N	347	365	Right-handed alpha
Helix 136	AP1	N	365	383	Right-handed alpha
Helix 137	AP2	O	63	68	Right-handed alpha
Helix 138	AP3	O	86	100	Right-handed alpha
Helix 139	AP4	O	101	104	Right-handed 310
Helix 140	AP5	O	111	116	Right-handed 310
Helix 141	AP6	O	121	130	Right-handed alpha
Helix 142	AP7	O	161	169	Right-handed alpha
Helix 143	AP8	O	187	196	Right-handed alpha
Helix 144	AP9	O	243	260	Right-handed alpha
Helix 145	AQ1	O	262	292	Right-handed alpha
Helix 146	AQ2	O	292	297	Right-handed alpha
Helix 147	AQ3	P	50	81	Right-handed alpha
Helix 148	AQ4	P	85	91	Right-handed alpha
Helix 149	AQ5	P	122	130	Right-handed alpha
Helix 150	AQ6	P	133	137	Right-handed 310
Helix 151	AQ7	Q	76	87	Right-handed alpha
Helix 152	AQ8	Q	88	109	Right-handed alpha
Helix 153	AQ9	Q	123	146	Right-handed alpha
Helix 154	AR1	R	4	18	Right-handed alpha
Helix 155	AR2	R	18	37	Right-handed alpha
Helix 156	AR3	R	44	48	Right-handed 310
Helix 157	AR4	R	53	62	Right-handed alpha
Helix 158	AR5	R	64	84	Right-handed alpha
Helix 159	AR6	R	89	93	Right-handed 310
Helix 160	AR7	R	103	122	Right-handed alpha
Helix 161	AR8	S	42	54	Right-handed alpha
Helix 162	AR9	S	56	81	Right-handed alpha
Helix 163	AS1	S	85	94	Right-handed alpha
Helix 164	AS2	T	13	43	Right-handed alpha
Helix 165	AS3	T	48	56	Right-handed alpha
Helix 166	AS4	U	21	46	Right-handed alpha
Helix 167	AS5	V	19	45	Right-handed alpha
Helix 168	AS6	V	51	56	Right-handed alpha
Helix 169	AS7	a	14	40	Right-handed alpha
Helix 170	AS8	a	54	70	Right-handed alpha
Helix 171	AS9	a	70	89	Right-handed alpha
Helix 172	AT1	a	97	119	Right-handed alpha
Helix 173	AT2	a	142	172	Right-handed alpha
Helix 174	AT3	a	183	198	Right-handed alpha
Helix 175	AT4	a	199	216	Right-handed alpha
Helix 176	AT5	a	223	227	Right-handed 310
Helix 177	AT6	a	228	264	Right-handed alpha
Helix 178	AT7	a	269	284	Right-handed alpha
Helix 179	AT8	a	289	296	Right-handed 310
Helix 180	AT9	a	298	328	Right-handed alpha
Helix 181	AU1	a	335	359	Right-handed alpha
Helix 182	AU2	a	363	368	Right-handed alpha
Helix 183	AU3	a	370	401	Right-handed alpha
Helix 184	AU4	a	406	426	Right-handed alpha
Helix 185	AU5	a	427	432	Right-handed alpha
Helix 186	AU6	a	444	448	Right-handed 310
Helix 187	AU7	a	449	475	Right-handed alpha
Helix 188	AU8	b	30	65	Right-handed alpha
Helix 189	AU9	b	78	109	Right-handed alpha
Helix 190	AV1	b	240	246	Right-handed alpha
Helix 191	AV2	c	22	42	Right-handed alpha
Helix 192	AV3	c	48	74	Right-handed alpha
Helix 193	AV4	c	80	115	Right-handed alpha
Helix 194	AV5	c	137	162	Right-handed alpha
Helix 195	AV6	c	164	189	Right-handed alpha
Helix 196	AV7	c	201	206	Right-handed alpha
Helix 197	AV8	c	206	231	Right-handed alpha
Helix 198	AV9	c	248	266	Right-handed alpha
Helix 199	AW1	d	67	77	Right-handed alpha
Helix 200	AW2	e	50	56	Right-handed alpha
Helix 201	AW3	e	65	68	Right-handed 310
Helix 202	AW4	e	69	78	Right-handed alpha
Helix 203	AW5	e	88	112	Right-handed alpha
Helix 204	AW6	e	121	126	Right-handed alpha
Helix 205	AW7	f	49	61	Right-handed alpha
Helix 206	AW8	f	65	78	Right-handed alpha
Helix 207	AW9	f	84	98	Right-handed alpha
Helix 208	AX1	f	101	115	Right-handed alpha
Helix 209	AX2	f	118	134	Right-handed alpha
Helix 210	AX3	g	29	54	Right-handed alpha
Helix 211	AX4	h	51	74	Right-handed alpha
Helix 212	AX5	i	8	54	Right-handed alpha
Helix 213	AX6	j	26	36	Right-handed alpha
Helix 214	AX7	j	44	57	Right-handed alpha
Helix 215	AX8	j	61	64	Right-handed 310
Helix 216	AX9	j	65	74	Right-handed alpha
Helix 217	AY1	k	60	72	Right-handed alpha
Helix 218	AY2	m	6	26	Right-handed alpha
Helix 219	AY3	m	27	29	Right-handed 310

There are 24 sheets in PDB entry 6GIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	37	42	anti-parallel
Strand 3	A	206	212	parallel
Strand 4	A	49	55	anti-parallel
Strand 5	A	102	108	anti-parallel
Strand 6	A	92	97	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	289	first strand
Strand 2	A	314	321	anti-parallel
Strand 3	A	326	334	anti-parallel
Strand 4	A	259	266	anti-parallel
Strand 5	A	432	437	anti-parallel
Strand 6	A	247	252	parallel
Strand 7	H	24	29	anti-parallel
Strand 8	D	299	302	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	21	first strand
Strand 2	B	185	190	parallel
Strand 3	B	28	35	anti-parallel
Strand 4	B	87	94	anti-parallel
Strand 5	B	77	82	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	232	first strand
Strand 2	B	352	357	parallel
Strand 3	B	237	244	anti-parallel
Strand 4	B	283	291	anti-parallel
Strand 5	B	273	278	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	313	first strand
Strand 2	B	345	346	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	23	first strand
Strand 2	C	218	219	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	135	first strand
Strand 2	D	146	148	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	222	223	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	111	first strand
Strand 2	E	114	120	anti-parallel
Strand 3	E	152	156	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	177	first strand
Strand 2	E	184	185	anti-parallel
Strand 3	E	191	193	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	207	first strand
Strand 2	E	212	214	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	33	first strand
Strand 2	L	37	42	anti-parallel
Strand 3	L	206	212	parallel
Strand 4	L	49	55	anti-parallel
Strand 5	L	102	108	anti-parallel
Strand 6	L	92	97	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	287	289	first strand
Strand 2	L	314	321	anti-parallel
Strand 3	L	326	334	anti-parallel
Strand 4	L	259	266	anti-parallel
Strand 5	L	432	437	anti-parallel
Strand 6	L	247	252	parallel
Strand 7	S	24	29	anti-parallel
Strand 8	O	299	302	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	21	first strand
Strand 2	M	185	190	parallel
Strand 3	M	28	35	anti-parallel
Strand 4	M	87	94	anti-parallel
Strand 5	M	77	82	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	228	232	first strand
Strand 2	M	352	357	parallel
Strand 3	M	237	244	anti-parallel
Strand 4	M	283	291	anti-parallel
Strand 5	M	273	278	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	312	313	first strand
Strand 2	M	345	346	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	22	23	first strand
Strand 2	N	218	219	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	133	135	first strand
Strand 2	O	146	148	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	213	214	first strand
Strand 2	O	222	223	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	106	111	first strand
Strand 2	P	114	120	anti-parallel
Strand 3	P	152	156	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	176	177	first strand
Strand 2	P	184	185	anti-parallel
Strand 3	P	191	193	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	205	207	first strand
Strand 2	P	212	214	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	143	145	first strand
Strand 2	b	126	130	anti-parallel
Strand 3	b	115	120	anti-parallel
Strand 4	b	175	177	parallel
Strand 5	b	208	209	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	167	170	first strand
Strand 2	b	234	239	parallel
Strand 3	b	217	221	anti-parallel
Strand 4	b	188	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GIQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GIQ