Analysis of interatomic Contacts of Structural Units in PDB entry:
6GIR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GIR entry

There is 1 chain in PDB entry 6GIR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6GIR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed 310
Helix 2
AA2
A
14 26Right-handed alpha
Helix 3
AA3
A
30 61Right-handed alpha
Helix 4
AA4
A
75 106Right-handed alpha
Helix 5
AA5
A
121 125Right-handed 310
Helix 6
AA6
A
145 154Right-handed alpha
Helix 7
AA7
A
158 166Right-handed alpha
Helix 8
AA8
A
174 194Right-handed alpha
Helix 9
AA9
A
207 211Right-handed alpha
Helix 10
AB1
A
239 246Right-handed alpha
Helix 11
AB2
A
253 257Right-handed 310
Helix 12
AB3
A
302 322Right-handed alpha
Helix 13
AB4
A
367 373Right-handed alpha
Helix 14
AB5
A
400 411Right-handed alpha
Helix 15
AB6
A
420 428Right-handed 310
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There are 4 sheets in PDB entry 6GIR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 131first strand
Strand 2
A
326 330anti-parallel
Strand 3
A
342 350anti-parallel
Strand 4
A
355 364anti-parallel
Strand 5
A
391 399anti-parallel
Strand 6
A
287 297anti-parallel
Strand 7
A
259 268anti-parallel
Strand 8
A
197 199parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
171 172anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
233 235anti-parallel
Strand 3
A
225 226anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 418first strand
Strand 2
A
432 434anti-parallel
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