Analysis of interatomic Contacts of Structural Units in PDB entry:
6GIT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GIT entry

There is 1 chain in PDB entry 6GIT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2LEU 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6GIT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 8Right-handed 310
Helix 2
AA2
A
76 80Right-handed 310
Helix 3
AA3
A
178 191Right-handed alpha
Helix 4
AA4
A
204 208Right-handed 310
Helix 5
AA5
A
217 222Right-handed alpha
Helix 6
AA6
A
233 248Right-handed alpha
Helix 7
AA7
A
257 261Right-handed 310
Helix 8
AA8
A
264 268Right-handed 310
Helix 9
AA9
A
270 277Right-handed alpha
Helix 10
AB1
A
314 327Right-handed alpha
Helix 11
AB2
A
354 368Right-handed alpha
Helix 12
AB3
A
424 428Right-handed 310
Helix 13
AB4
A
503 508Right-handed alpha
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There are 6 sheets in PDB entry 6GIT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
496 501parallel
Strand 3
A
478 485anti-parallel
Strand 4
A
467 473anti-parallel
Strand 5
A
169 172anti-parallel
Strand 6
A
195 198parallel
Strand 7
A
252 254parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
459 463parallel
Strand 3
A
381 384anti-parallel
Strand 4
A
398 402anti-parallel
Strand 5
A
372 375parallel
Strand 6
A
334 338parallel
Strand 7
A
299 303parallel
Strand 8
A
292 296anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 50first strand
Strand 2
A
57 63anti-parallel
Strand 3
A
120 126anti-parallel
Strand 4
A
100 102anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
116 117anti-parallel
Strand 3
A
105 106anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
83 87anti-parallel
Strand 3
A
134 140anti-parallel
Strand 4
A
152 155anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
391 392anti-parallel
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