Analysis of interatomic Contacts of Structural Units in PDB entry:
6GIW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GIW entry

There are 4 chains in PDB entry 6GIW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5ASP 179
B
 GLU 4ASP 179
C
 GLU 5ASP 179
D
 GLU 5ASP 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6GIW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
117 121Right-handed 310
Helix 2
AA2
B
117 121Right-handed 310
Helix 3
AA3
C
117 121Right-handed 310
Helix 4
AA4
D
117 121Right-handed 310
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There are 13 sheets in PDB entry 6GIW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 160first strand
Strand 2
A
145 152anti-parallel
Strand 3
A
134 138anti-parallel
Strand 4
A
173 177anti-parallel
Strand 5
A
20 25anti-parallel
Strand 6
A
62 65anti-parallel
Strand 7
A
80 85anti-parallel
Strand 8
A
122 126anti-parallel
Strand 9
A
134 138anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
48 51anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
109 110anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 25first strand
Strand 2
B
62 65anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
122 126anti-parallel
Strand 5
B
134 137anti-parallel
Strand 6
B
173 177anti-parallel
Strand 7
B
20 25anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
48 51anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
109 110anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 152first strand
Strand 2
B
155 160anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
155 160first strand
Strand 2
C
145 152anti-parallel
Strand 3
C
134 138anti-parallel
Strand 4
C
173 177anti-parallel
Strand 5
C
20 25anti-parallel
Strand 6
C
62 65anti-parallel
Strand 7
C
80 85anti-parallel
Strand 8
C
122 126anti-parallel
Strand 9
C
134 138anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 37first strand
Strand 2
C
48 51anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 100first strand
Strand 2
C
109 110anti-parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
155 160first strand
Strand 2
D
145 152anti-parallel
Strand 3
D
134 138anti-parallel
Strand 4
D
173 177anti-parallel
Strand 5
D
20 25anti-parallel
Strand 6
D
62 65anti-parallel
Strand 7
D
80 85anti-parallel
Strand 8
D
122 126anti-parallel
Strand 9
D
134 138anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 37first strand
Strand 2
D
48 51anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 100first strand
Strand 2
D
109 110anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il