Analysis of interatomic Contacts of Structural Units in PDB entry:
6GIY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GIY entry

There are 9 chains in PDB entry 6GIY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	GLY 587
B	LEU 4	PRO 586
C	SER 8	GLU 357
D	MET 1	GLU 311
E	MET 1	GLU 311
F	MET 1	GLU 311
G	MET 1	ARG 444
H	MET 1	ARG 444
I	MET 1	GLU 311

There are105 helices in PDB entry 6GIY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	21	Right-handed alpha
Helix 2	AA2	A	46	51	Right-handed alpha
Helix 3	AA3	A	55	66	Right-handed alpha
Helix 4	AA4	A	68	77	Right-handed alpha
Helix 5	AA5	A	164	173	Right-handed alpha
Helix 6	AA6	A	183	195	Right-handed alpha
Helix 7	AA7	A	229	234	Right-handed alpha
Helix 8	AA8	A	354	358	Right-handed 310
Helix 9	AA9	A	430	435	Right-handed 310
Helix 10	AB1	A	461	466	Right-handed alpha
Helix 11	AB2	A	466	471	Right-handed alpha
Helix 12	AB3	A	478	485	Right-handed alpha
Helix 13	AB4	A	494	500	Right-handed alpha
Helix 14	AB5	A	538	553	Right-handed alpha
Helix 15	AB6	B	5	27	Right-handed alpha
Helix 16	AB7	B	28	32	Right-handed 310
Helix 17	AB8	B	33	38	Right-handed alpha
Helix 18	AB9	B	46	68	Right-handed alpha
Helix 19	AC1	B	70	79	Right-handed 310
Helix 20	AC2	B	81	86	Right-handed 310
Helix 21	AC3	B	167	171	Right-handed 310
Helix 22	AC4	B	188	196	Right-handed alpha
Helix 23	AC5	B	197	199	Right-handed 310
Helix 24	AC6	B	222	226	Right-handed 310
Helix 25	AC7	B	229	236	Right-handed alpha
Helix 26	AC8	B	275	280	Right-handed alpha
Helix 27	AC9	B	324	329	Right-handed alpha
Helix 28	AD1	B	329	334	Right-handed alpha
Helix 29	AD2	B	356	361	Right-handed alpha
Helix 30	AD3	B	396	401	Right-handed 310
Helix 31	AD4	B	459	464	Right-handed alpha
Helix 32	AD5	B	464	469	Right-handed alpha
Helix 33	AD6	B	477	483	Right-handed alpha
Helix 34	AD7	B	486	490	Right-handed 310
Helix 35	AD8	B	494	502	Right-handed alpha
Helix 36	AD9	B	537	551	Right-handed alpha
Helix 37	AE1	C	9	15	Right-handed alpha
Helix 38	AE2	C	22	26	Right-handed 310
Helix 39	AE3	C	27	39	Right-handed alpha
Helix 40	AE4	C	45	51	Right-handed 310
Helix 41	AE5	C	101	109	Right-handed alpha
Helix 42	AE6	C	112	117	Right-handed 310
Helix 43	AE7	C	118	123	Right-handed alpha
Helix 44	AE8	C	123	139	Right-handed alpha
Helix 45	AE9	C	154	160	Right-handed alpha
Helix 46	AF1	C	179	187	Right-handed alpha
Helix 47	AF2	C	195	205	Right-handed alpha
Helix 48	AF3	C	261	269	Right-handed alpha
Helix 49	AF4	C	273	283	Right-handed alpha
Helix 50	AF5	D	15	35	Right-handed alpha
Helix 51	AF6	D	194	218	Right-handed alpha
Helix 52	AF7	D	225	230	Right-handed alpha
Helix 53	AF8	D	235	245	Right-handed alpha
Helix 54	AF9	D	246	254	Right-handed alpha
Helix 55	AG1	D	260	275	Right-handed alpha
Helix 56	AG2	D	294	297	Right-handed 310
Helix 57	AG3	D	298	311	Right-handed alpha
Helix 58	AG4	E	15	32	Right-handed alpha
Helix 59	AG5	E	190	193	Right-handed 310
Helix 60	AG6	E	194	218	Right-handed alpha
Helix 61	AG7	E	219	222	Right-handed 310
Helix 62	AG8	E	232	242	Right-handed alpha
Helix 63	AG9	E	246	252	Right-handed alpha
Helix 64	AH1	E	261	277	Right-handed alpha
Helix 65	AH2	E	294	297	Right-handed 310
Helix 66	AH3	E	298	310	Right-handed alpha
Helix 67	AH4	F	15	33	Right-handed alpha
Helix 68	AH5	F	53	57	Right-handed 310
Helix 69	AH6	F	194	222	Right-handed alpha
Helix 70	AH7	F	230	245	Right-handed alpha
Helix 71	AH8	F	246	253	Right-handed alpha
Helix 72	AH9	F	260	275	Right-handed alpha
Helix 73	AI1	F	275	280	Right-handed alpha
Helix 74	AI2	F	294	297	Right-handed 310
Helix 75	AI3	F	298	310	Right-handed alpha
Helix 76	AI4	G	16	36	Right-handed alpha
Helix 77	AI5	G	133	137	Right-handed 310
Helix 78	AI6	G	194	218	Right-handed alpha
Helix 79	AI7	G	218	223	Right-handed alpha
Helix 80	AI8	G	230	245	Right-handed alpha
Helix 81	AI9	G	246	253	Right-handed alpha
Helix 82	AJ1	G	260	273	Right-handed alpha
Helix 83	AJ2	G	294	297	Right-handed 310
Helix 84	AJ3	G	298	311	Right-handed alpha
Helix 85	AJ4	G	354	366	Right-handed alpha
Helix 86	AJ5	G	411	419	Right-handed alpha
Helix 87	AJ6	H	15	35	Right-handed alpha
Helix 88	AJ7	H	53	57	Right-handed 310
Helix 89	AJ8	H	194	220	Right-handed alpha
Helix 90	AJ9	H	235	254	Right-handed alpha
Helix 91	AK1	H	260	276	Right-handed alpha
Helix 92	AK2	H	283	287	Right-handed 310
Helix 93	AK3	H	298	310	Right-handed alpha
Helix 94	AK4	H	336	341	Right-handed 310
Helix 95	AK5	H	355	359	Right-handed 310
Helix 96	AK6	H	413	422	Right-handed alpha
Helix 97	AK7	H	428	433	Right-handed 310
Helix 98	AK8	I	15	24	Right-handed alpha
Helix 99	AK9	I	25	35	Right-handed alpha
Helix 100	AL1	I	89	92	Right-handed 310
Helix 101	AL2	I	194	220	Right-handed alpha
Helix 102	AL3	I	230	255	Right-handed alpha
Helix 103	AL4	I	260	276	Right-handed alpha
Helix 104	AL5	I	283	287	Right-handed 310
Helix 105	AL6	I	298	310	Right-handed alpha

There are 37 sheets in PDB entry 6GIY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	A	90	94	anti-parallel
Strand 3	A	443	444	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	409	414	anti-parallel
Strand 3	A	338	342	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	509	first strand
Strand 2	A	525	529	anti-parallel
Strand 3	A	564	567	parallel
Strand 4	A	575	576	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	520	522	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	154	155	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	272	273	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	307	first strand
Strand 2	B	411	416	anti-parallel
Strand 3	B	336	342	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	376	first strand
Strand 2	B	392	394	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	380	first strand
Strand 2	B	388	389	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	B	523	525	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	566	first strand
Strand 2	B	574	575	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	213	first strand
Strand 2	C	254	258	anti-parallel
Strand 3	C	293	299	parallel
Strand 4	C	331	337	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	50	first strand
Strand 2	D	60	67	anti-parallel
Strand 3	D	73	75	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	153	first strand
Strand 2	D	97	104	anti-parallel
Strand 3	D	162	172	anti-parallel
Strand 4	D	178	180	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	133	first strand
Strand 2	D	140	148	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	49	first strand
Strand 2	E	61	67	anti-parallel
Strand 3	E	73	75	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	154	first strand
Strand 2	E	97	104	anti-parallel
Strand 3	E	162	163	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	154	first strand
Strand 2	E	97	104	anti-parallel
Strand 3	E	166	172	anti-parallel
Strand 4	E	178	180	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	133	first strand
Strand 2	E	140	147	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	49	first strand
Strand 2	F	61	68	anti-parallel
Strand 3	F	72	75	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	132	first strand
Strand 2	F	141	145	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	172	first strand
Strand 2	F	178	180	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	49	first strand
Strand 2	G	61	67	anti-parallel
Strand 3	G	73	75	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	59	first strand
Strand 2	G	86	87	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	154	first strand
Strand 2	G	98	102	anti-parallel
Strand 3	G	165	172	anti-parallel
Strand 4	G	178	180	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	131	first strand
Strand 2	G	142	147	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	318	321	first strand
Strand 2	G	435	442	anti-parallel
Strand 3	G	345	351	anti-parallel
Strand 4	G	405	410	anti-parallel
Strand 5	G	385	389	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	325	326	first strand
Strand 2	G	329	333	anti-parallel
Strand 3	G	423	427	anti-parallel
Strand 4	G	367	369	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	49	first strand
Strand 2	H	61	66	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	96	102	anti-parallel
Strand 3	H	165	172	anti-parallel
Strand 4	H	178	180	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	132	first strand
Strand 2	H	141	148	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	331	332	first strand
Strand 2	H	424	425	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	389	390	first strand
Strand 2	H	405	406	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	50	first strand
Strand 2	I	58	68	anti-parallel
Strand 3	I	72	75	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	50	first strand
Strand 2	I	58	68	anti-parallel
Strand 3	I	86	87	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	151	153	first strand
Strand 2	I	97	104	anti-parallel
Strand 3	I	162	172	anti-parallel
Strand 4	I	178	180	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	126	130	first strand
Strand 2	I	143	147	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GIY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GIY