Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GJ1 entry

There are 4 chains in PDB entry 6GJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	GLY 587
B	LEU 4	PRO 586
C	SER 8	GLU 357
D	VAL 23	THR 143

There are 48 helices in PDB entry 6GJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	21	Right-handed alpha
Helix 2	AA2	A	46	66	Right-handed alpha
Helix 3	AA3	A	67	70	Right-handed 310
Helix 4	AA4	A	71	77	Right-handed alpha
Helix 5	AA5	A	98	102	Right-handed 310
Helix 6	AA6	A	168	173	Right-handed alpha
Helix 7	AA7	A	186	195	Right-handed alpha
Helix 8	AA8	A	229	234	Right-handed alpha
Helix 9	AA9	A	430	435	Right-handed 310
Helix 10	AB1	A	458	471	Right-handed alpha
Helix 11	AB2	A	478	484	Right-handed alpha
Helix 12	AB3	A	487	493	Right-handed alpha
Helix 13	AB4	A	494	501	Right-handed alpha
Helix 14	AB5	A	538	553	Right-handed alpha
Helix 15	AB6	B	5	22	Right-handed alpha
Helix 16	AB7	B	27	32	Right-handed 310
Helix 17	AB8	B	33	38	Right-handed alpha
Helix 18	AB9	B	46	58	Right-handed alpha
Helix 19	AC1	B	59	68	Right-handed alpha
Helix 20	AC2	B	70	74	Right-handed 310
Helix 21	AC3	B	81	86	Right-handed 310
Helix 22	AC4	B	188	197	Right-handed alpha
Helix 23	AC5	B	222	226	Right-handed 310
Helix 24	AC6	B	229	235	Right-handed alpha
Helix 25	AC7	B	236	238	Right-handed 310
Helix 26	AC8	B	275	280	Right-handed alpha
Helix 27	AC9	B	329	334	Right-handed alpha
Helix 28	AD1	B	458	469	Right-handed alpha
Helix 29	AD2	B	477	483	Right-handed alpha
Helix 30	AD3	B	486	490	Right-handed 310
Helix 31	AD4	B	494	502	Right-handed alpha
Helix 32	AD5	B	537	553	Right-handed alpha
Helix 33	AD6	C	9	15	Right-handed alpha
Helix 34	AD7	C	22	26	Right-handed 310
Helix 35	AD8	C	27	39	Right-handed alpha
Helix 36	AD9	C	45	51	Right-handed 310
Helix 37	AE1	C	101	109	Right-handed alpha
Helix 38	AE2	C	112	117	Right-handed 310
Helix 39	AE3	C	118	123	Right-handed alpha
Helix 40	AE4	C	123	139	Right-handed alpha
Helix 41	AE5	C	154	162	Right-handed alpha
Helix 42	AE6	C	179	187	Right-handed alpha
Helix 43	AE7	C	195	205	Right-handed alpha
Helix 44	AE8	C	261	266	Right-handed alpha
Helix 45	AE9	C	273	283	Right-handed alpha
Helix 46	AF1	D	24	43	Right-handed alpha
Helix 47	AF2	D	59	64	Right-handed alpha
Helix 48	AF3	D	68	85	Right-handed alpha

There are 13 sheets in PDB entry 6GJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	442	444	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	342	first strand
Strand 2	A	409	412	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	514	first strand
Strand 2	A	520	529	anti-parallel
Strand 3	A	565	567	parallel
Strand 4	A	574	576	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	299	300	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	220	221	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	272	273	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	307	first strand
Strand 2	B	411	414	anti-parallel
Strand 3	B	340	342	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	376	first strand
Strand 2	B	392	394	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	B	523	525	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	566	first strand
Strand 2	B	574	575	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	213	first strand
Strand 2	C	254	258	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	336	337	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	97	first strand
Strand 2	D	108	116	anti-parallel
Strand 3	D	133	139	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJ1