Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GJ3 entry

There are 7 chains in PDB entry 6GJ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	HIS 215	ARG 326
D	MET 1	GLU 311
E	MET 1	GLU 311
F	MET 1	GLU 311
G	MET 1	ARG 444
H	MET 1	ARG 444
I	MET 1	GLU 311

There are 53 helices in PDB entry 6GJ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	15	35	Right-handed alpha
Helix 2	AA2	D	190	193	Right-handed 310
Helix 3	AA3	D	194	218	Right-handed alpha
Helix 4	AA4	D	235	245	Right-handed alpha
Helix 5	AA5	D	246	256	Right-handed alpha
Helix 6	AA6	D	260	275	Right-handed alpha
Helix 7	AA7	D	294	297	Right-handed 310
Helix 8	AA8	D	298	310	Right-handed alpha
Helix 9	AA9	E	15	33	Right-handed alpha
Helix 10	AB1	E	190	193	Right-handed 310
Helix 11	AB2	E	194	218	Right-handed alpha
Helix 12	AB3	E	236	242	Right-handed alpha
Helix 13	AB4	E	246	251	Right-handed alpha
Helix 14	AB5	E	261	277	Right-handed alpha
Helix 15	AB6	E	294	297	Right-handed 310
Helix 16	AB7	E	298	310	Right-handed alpha
Helix 17	AB8	F	16	35	Right-handed alpha
Helix 18	AB9	F	53	57	Right-handed 310
Helix 19	AC1	F	194	222	Right-handed alpha
Helix 20	AC2	F	230	244	Right-handed alpha
Helix 21	AC3	F	246	251	Right-handed alpha
Helix 22	AC4	F	261	275	Right-handed alpha
Helix 23	AC5	F	294	297	Right-handed 310
Helix 24	AC6	F	298	310	Right-handed alpha
Helix 25	AC7	G	16	36	Right-handed alpha
Helix 26	AC8	G	195	218	Right-handed alpha
Helix 27	AC9	G	218	223	Right-handed alpha
Helix 28	AD1	G	230	245	Right-handed alpha
Helix 29	AD2	G	246	253	Right-handed alpha
Helix 30	AD3	G	260	276	Right-handed alpha
Helix 31	AD4	G	294	297	Right-handed 310
Helix 32	AD5	G	298	310	Right-handed alpha
Helix 33	AD6	G	354	366	Right-handed alpha
Helix 34	AD7	G	411	420	Right-handed alpha
Helix 35	AD8	H	15	35	Right-handed alpha
Helix 36	AD9	H	194	223	Right-handed alpha
Helix 37	AE1	H	231	254	Right-handed alpha
Helix 38	AE2	H	260	275	Right-handed alpha
Helix 39	AE3	H	283	287	Right-handed 310
Helix 40	AE4	H	298	310	Right-handed alpha
Helix 41	AE5	H	336	341	Right-handed 310
Helix 42	AE6	H	412	422	Right-handed alpha
Helix 43	AE7	I	15	24	Right-handed alpha
Helix 44	AE8	I	25	35	Right-handed alpha
Helix 45	AE9	I	51	56	Right-handed 310
Helix 46	AF1	I	89	92	Right-handed 310
Helix 47	AF2	I	194	220	Right-handed alpha
Helix 48	AF3	I	224	228	Right-handed 310
Helix 49	AF4	I	230	245	Right-handed alpha
Helix 50	AF5	I	246	254	Right-handed alpha
Helix 51	AF6	I	260	276	Right-handed alpha
Helix 52	AF7	I	283	287	Right-handed 310
Helix 53	AF8	I	298	310	Right-handed alpha

There are 24 sheets in PDB entry 6GJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	49	first strand
Strand 2	D	61	67	anti-parallel
Strand 3	D	73	75	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	153	first strand
Strand 2	D	97	102	anti-parallel
Strand 3	D	165	172	anti-parallel
Strand 4	D	178	180	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	131	first strand
Strand 2	D	142	148	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	49	first strand
Strand 2	E	61	67	anti-parallel
Strand 3	E	73	75	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	154	first strand
Strand 2	E	97	104	anti-parallel
Strand 3	E	162	163	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	154	first strand
Strand 2	E	97	104	anti-parallel
Strand 3	E	166	173	anti-parallel
Strand 4	E	177	179	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	133	first strand
Strand 2	E	140	147	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	49	first strand
Strand 2	F	61	66	anti-parallel
Strand 3	F	74	75	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	132	first strand
Strand 2	F	141	145	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	173	first strand
Strand 2	F	177	180	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	50	first strand
Strand 2	G	58	67	anti-parallel
Strand 3	G	73	75	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	50	first strand
Strand 2	G	58	67	anti-parallel
Strand 3	G	86	87	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	154	first strand
Strand 2	G	98	102	anti-parallel
Strand 3	G	165	169	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	131	first strand
Strand 2	G	142	147	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	318	321	first strand
Strand 2	G	435	442	anti-parallel
Strand 3	G	345	351	anti-parallel
Strand 4	G	405	407	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	325	326	first strand
Strand 2	G	329	333	anti-parallel
Strand 3	G	423	427	anti-parallel
Strand 4	G	367	369	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	49	first strand
Strand 2	H	61	67	anti-parallel
Strand 3	H	73	74	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	96	102	anti-parallel
Strand 3	H	165	172	anti-parallel
Strand 4	H	178	180	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	132	first strand
Strand 2	H	141	148	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	387	390	first strand
Strand 2	H	405	408	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	49	first strand
Strand 2	I	61	68	anti-parallel
Strand 3	I	72	73	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	59	first strand
Strand 2	I	86	87	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	151	153	first strand
Strand 2	I	97	104	anti-parallel
Strand 3	I	162	172	anti-parallel
Strand 4	I	178	180	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	126	127	first strand
Strand 2	I	146	147	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GJ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJ3