Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GJE entry

There are 4 chains in PDB entry 6GJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 20SER 357
B
 GLN 40GLU 121
C
 ASN 38LEU 120
D
 ASN 38ASP 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6GJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 40Right-handed 310
Helix 2
AA2
A
114 116Right-handed 310
Helix 3
AA3
A
130 134Right-handed 310
Helix 4
AA4
A
175 185Right-handed alpha
Helix 5
AA5
A
185 190Right-handed alpha
Helix 6
AA6
A
218 227Right-handed alpha
Helix 7
AA7
A
228 231Right-handed 310
Helix 8
AA8
A
266 277Right-handed alpha
Helix 9
AA9
A
281 285Right-handed 310
Helix 10
AB1
A
319 340Right-handed alpha
Helix 11
AB2
B
78 100Right-handed alpha
Helix 12
AB3
B
105 111Right-handed alpha
Helix 13
AB4
B
112 121Right-handed alpha
Helix 14
AB5
C
78 102Right-handed alpha
Helix 15
AB6
C
105 120Right-handed alpha
Helix 16
AB7
D
78 97Right-handed alpha
Helix 17
AB8
D
105 119Right-handed alpha
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There are 7 sheets in PDB entry 6GJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
21 24anti-parallel
Strand 3
A
141 143parallel
Strand 4
A
165 168parallel
Strand 5
A
171 173anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
46 49parallel
Strand 3
A
63 70parallel
Strand 4
D
43 47anti-parallel
Strand 5
D
50 54anti-parallel
Strand 6
C
60 64parallel
Strand 7
B
70 73parallel
Strand 8
B
76 77anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
46 49parallel
Strand 3
A
63 70parallel
Strand 4
A
84 87parallel
Strand 5
C
43 47anti-parallel
Strand 6
C
50 54anti-parallel
Strand 7
B
61 64parallel
Strand 8
D
71 73parallel
Strand 9
D
76 77anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
75 79parallel
Strand 3
B
43 47anti-parallel
Strand 4
B
50 54anti-parallel
Strand 5
D
61 64parallel
Strand 6
C
71 73parallel
Strand 7
C
76 77anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
192 193parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
198 200parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 295first strand
Strand 2
A
305 313anti-parallel
Strand 3
A
255 261anti-parallel
Strand 4
A
341 348anti-parallel
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