Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GJH entry

There are 12 chains in PDB entry 6GJH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 84	PRO 170
B	GLY 84	PRO 170
E	GLY 84	PRO 170
F	GLY 84	PRO 170
G	GLY 84	PRO 170
H	GLY 84	PRO 170
C	GLY 84	PRO 170
D	VAL 85	PRO 170
K	ALA 76	GLN 80
J	LEU 77	VAL 85
L	ALA 76	ARG 79
I	ALA 76	ARG 79

There are 16 helices in PDB entry 6GJH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	107	Right-handed 310
Helix 2	AA2	A	149	153	Right-handed 310
Helix 3	AA3	B	105	107	Right-handed 310
Helix 4	AA4	B	149	153	Right-handed 310
Helix 5	AA5	E	105	107	Right-handed 310
Helix 6	AA6	E	149	153	Right-handed 310
Helix 7	AA7	F	105	107	Right-handed 310
Helix 8	AA8	F	149	153	Right-handed 310
Helix 9	AA9	G	105	107	Right-handed 310
Helix 10	AB1	G	149	153	Right-handed 310
Helix 11	AB2	H	105	107	Right-handed 310
Helix 12	AB3	H	149	153	Right-handed 310
Helix 13	AB4	C	105	107	Right-handed 310
Helix 14	AB5	C	149	153	Right-handed 310
Helix 15	AB6	D	105	107	Right-handed 310
Helix 16	AB7	D	149	153	Right-handed 310

There are 12 sheets in PDB entry 6GJH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	100	first strand
Strand 2	A	162	168	anti-parallel
Strand 3	A	154	157	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	114	first strand
Strand 2	A	117	128	anti-parallel
Strand 3	A	133	143	anti-parallel
Strand 4	B	133	143	anti-parallel
Strand 5	B	117	128	anti-parallel
Strand 6	B	109	114	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	100	first strand
Strand 2	B	162	168	anti-parallel
Strand 3	B	154	157	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	100	first strand
Strand 2	E	162	168	anti-parallel
Strand 3	E	154	157	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	114	first strand
Strand 2	E	117	129	anti-parallel
Strand 3	E	132	143	anti-parallel
Strand 4	F	133	143	anti-parallel
Strand 5	F	117	128	anti-parallel
Strand 6	F	109	114	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	88	first strand
Strand 2	F	94	100	anti-parallel
Strand 3	F	162	168	anti-parallel
Strand 4	F	154	157	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	100	first strand
Strand 2	G	162	168	anti-parallel
Strand 3	G	154	157	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	109	114	first strand
Strand 2	G	117	128	anti-parallel
Strand 3	G	133	143	anti-parallel
Strand 4	H	132	143	anti-parallel
Strand 5	H	117	129	anti-parallel
Strand 6	H	109	114	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	90	first strand
Strand 2	H	94	100	anti-parallel
Strand 3	H	162	168	anti-parallel
Strand 4	H	154	157	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	100	first strand
Strand 2	C	162	168	anti-parallel
Strand 3	C	154	157	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	114	first strand
Strand 2	C	117	128	anti-parallel
Strand 3	C	133	143	anti-parallel
Strand 4	D	133	143	anti-parallel
Strand 5	D	117	128	anti-parallel
Strand 6	D	109	114	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	94	100	anti-parallel
Strand 3	D	162	168	anti-parallel
Strand 4	D	154	157	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GJH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJH