Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GJQ entry

There are 8 chains in PDB entry 6GJQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 443	GLN 637
B	GLN 1	SER 121
C	ASP 443	LEU 636
D	GLN 1	SER 121
E	ASP 443	GLN 637
F	GLN 1	SER 121
G	ASP 443	GLN 637
H	GLN 1	SER 121

There are 41 helices in PDB entry 6GJQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	463	473	Right-handed alpha
Helix 2	AA2	A	502	508	Right-handed alpha
Helix 3	AA3	A	513	524	Right-handed alpha
Helix 4	AA4	A	526	532	Right-handed alpha
Helix 5	AA5	A	535	538	Right-handed 310
Helix 6	AA6	A	549	564	Right-handed alpha
Helix 7	AA7	A	579	590	Right-handed alpha
Helix 8	AA8	A	606	611	Right-handed alpha
Helix 9	AA9	A	629	635	Right-handed alpha
Helix 10	AB1	B	86	90	Right-handed 310
Helix 11	AB2	C	463	473	Right-handed alpha
Helix 12	AB3	C	502	508	Right-handed alpha
Helix 13	AB4	C	513	524	Right-handed alpha
Helix 14	AB5	C	526	532	Right-handed alpha
Helix 15	AB6	C	535	538	Right-handed 310
Helix 16	AB7	C	549	564	Right-handed alpha
Helix 17	AB8	C	579	590	Right-handed alpha
Helix 18	AB9	C	606	611	Right-handed alpha
Helix 19	AC1	C	629	635	Right-handed alpha
Helix 20	AC2	D	86	90	Right-handed 310
Helix 21	AC3	E	463	473	Right-handed alpha
Helix 22	AC4	E	502	508	Right-handed alpha
Helix 23	AC5	E	513	524	Right-handed alpha
Helix 24	AC6	E	526	532	Right-handed alpha
Helix 25	AC7	E	535	538	Right-handed 310
Helix 26	AC8	E	549	564	Right-handed alpha
Helix 27	AC9	E	579	590	Right-handed alpha
Helix 28	AD1	E	606	611	Right-handed alpha
Helix 29	AD2	E	629	636	Right-handed alpha
Helix 30	AD3	F	61	64	Right-handed 310
Helix 31	AD4	F	86	90	Right-handed 310
Helix 32	AD5	G	463	473	Right-handed alpha
Helix 33	AD6	G	502	508	Right-handed alpha
Helix 34	AD7	G	513	524	Right-handed alpha
Helix 35	AD8	G	526	532	Right-handed alpha
Helix 36	AD9	G	535	538	Right-handed 310
Helix 37	AE1	G	549	564	Right-handed alpha
Helix 38	AE2	G	579	590	Right-handed alpha
Helix 39	AE3	G	606	611	Right-handed alpha
Helix 40	AE4	G	629	635	Right-handed alpha
Helix 41	AE5	H	86	90	Right-handed 310

There are 20 sheets in PDB entry 6GJQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	491	first strand
Strand 2	A	568	572	parallel
Strand 3	A	600	603	parallel
Strand 4	A	453	457	parallel
Strand 5	A	615	620	parallel
Strand 6	A	623	628	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	501	first strand
Strand 2	A	540	541	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	68	72	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	115	119	parallel
Strand 3	B	91	100	anti-parallel
Strand 4	B	30	39	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	57	59	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	115	119	parallel
Strand 3	B	91	100	anti-parallel
Strand 4	B	107	111	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	491	first strand
Strand 2	C	568	572	parallel
Strand 3	C	600	603	parallel
Strand 4	C	453	457	parallel
Strand 5	C	615	620	parallel
Strand 6	C	623	628	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	500	501	first strand
Strand 2	C	540	541	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	91	100	anti-parallel
Strand 4	D	31	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	91	100	anti-parallel
Strand 4	D	107	111	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	488	491	first strand
Strand 2	E	568	571	parallel
Strand 3	E	600	603	parallel
Strand 4	E	453	458	parallel
Strand 5	E	615	620	parallel
Strand 6	E	623	628	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	500	501	first strand
Strand 2	E	540	541	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	68	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	115	119	parallel
Strand 3	F	91	100	anti-parallel
Strand 4	F	30	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	115	119	parallel
Strand 3	F	91	100	anti-parallel
Strand 4	F	107	111	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	488	491	first strand
Strand 2	G	568	572	parallel
Strand 3	G	600	603	parallel
Strand 4	G	453	457	parallel
Strand 5	G	615	620	parallel
Strand 6	G	623	628	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	500	501	first strand
Strand 2	G	540	541	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	91	100	anti-parallel
Strand 4	H	31	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	91	100	anti-parallel
Strand 4	H	107	111	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GJQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJQ