Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GJS entry

There are 3 chains in PDB entry 6GJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 386LEU 636
B
 GLN 1SER 122
C
 GLN 1SER 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6GJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
463 472Right-handed alpha
Helix 2
AA2
A
502 508Right-handed alpha
Helix 3
AA3
A
513 524Right-handed alpha
Helix 4
AA4
A
526 532Right-handed alpha
Helix 5
AA5
A
535 538Right-handed 310
Helix 6
AA6
A
549 564Right-handed alpha
Helix 7
AA7
A
579 590Right-handed alpha
Helix 8
AA8
A
606 611Right-handed alpha
Helix 9
AA9
A
629 635Right-handed alpha
Helix 10
AB1
B
86 90Right-handed 310
Helix 11
AB2
C
60 63Right-handed 310
Helix 12
AB3
C
85 89Right-handed 310
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There are 9 sheets in PDB entry 6GJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 449first strand
Strand 2
A
390 399anti-parallel
Strand 3
A
479 484anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
568 572parallel
Strand 3
A
600 603parallel
Strand 4
A
453 457parallel
Strand 5
A
615 620parallel
Strand 6
A
623 628anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 501first strand
Strand 2
A
540 541anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
18 26anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
117 121parallel
Strand 3
B
91 101anti-parallel
Strand 4
B
28 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
57 59anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
117 121parallel
Strand 3
B
91 101anti-parallel
Strand 4
B
110 113anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 7first strand
Strand 2
C
18 26anti-parallel
Strand 3
C
76 81anti-parallel
Strand 4
C
66 71anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
111 116parallel
Strand 3
C
90 99anti-parallel
Strand 4
C
30 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
56 58anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
111 116parallel
Strand 3
C
90 99anti-parallel
Strand 4
C
103 107anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il