Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GJT entry

There are 6 chains in PDB entry 6GJT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	PRO 260
B	GLY 2	GLN 261
C	SER 4	GLN 261
D	GLY 2	ASN 263
E	MET 1	GLN 261
F	ASN 3	THR 262

There are 9 helices in PDB entry 6GJT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	101	109	Right-handed alpha
Helix 2	AA2	A	243	247	Right-handed 310
Helix 3	AA3	B	101	109	Right-handed alpha
Helix 4	AA4	B	243	247	Right-handed 310
Helix 5	AA5	C	243	247	Right-handed 310
Helix 6	AA6	D	243	247	Right-handed 310
Helix 7	AA7	E	101	109	Right-handed alpha
Helix 8	AA8	E	243	247	Right-handed 310
Helix 9	AA9	F	243	247	Right-handed 310

There are 30 sheets in PDB entry 6GJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	12	16	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	125	first strand
Strand 2	A	251	258	anti-parallel
Strand 3	A	162	172	anti-parallel
Strand 4	A	233	235	anti-parallel
Strand 5	A	129	131	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	125	first strand
Strand 2	A	251	258	anti-parallel
Strand 3	A	162	172	anti-parallel
Strand 4	A	203	212	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	219	228	parallel
Strand 3	A	147	154	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	219	228	parallel
Strand 3	A	176	184	anti-parallel
Strand 4	A	192	198	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	12	16	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	125	first strand
Strand 2	B	251	258	anti-parallel
Strand 3	B	162	172	anti-parallel
Strand 4	B	233	235	anti-parallel
Strand 5	B	129	131	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	125	first strand
Strand 2	B	251	258	anti-parallel
Strand 3	B	162	172	anti-parallel
Strand 4	B	203	212	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	219	228	parallel
Strand 3	B	147	154	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	219	228	parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	192	198	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	12	16	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	125	first strand
Strand 2	C	251	258	anti-parallel
Strand 3	C	162	172	anti-parallel
Strand 4	C	233	235	anti-parallel
Strand 5	C	129	131	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	125	first strand
Strand 2	C	251	258	anti-parallel
Strand 3	C	162	172	anti-parallel
Strand 4	C	203	212	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	135	first strand
Strand 2	C	219	228	parallel
Strand 3	C	147	154	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	135	first strand
Strand 2	C	219	228	parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	192	198	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	9	first strand
Strand 2	D	12	16	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	125	first strand
Strand 2	D	251	258	anti-parallel
Strand 3	D	162	172	anti-parallel
Strand 4	D	233	235	anti-parallel
Strand 5	D	129	131	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	125	first strand
Strand 2	D	251	258	anti-parallel
Strand 3	D	162	172	anti-parallel
Strand 4	D	203	212	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	219	228	parallel
Strand 3	D	147	154	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	219	228	parallel
Strand 3	D	176	184	anti-parallel
Strand 4	D	192	198	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	9	first strand
Strand 2	E	12	16	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	125	first strand
Strand 2	E	251	258	anti-parallel
Strand 3	E	162	172	anti-parallel
Strand 4	E	233	235	anti-parallel
Strand 5	E	129	131	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	125	first strand
Strand 2	E	251	258	anti-parallel
Strand 3	E	162	172	anti-parallel
Strand 4	E	203	212	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	135	first strand
Strand 2	E	219	228	parallel
Strand 3	E	147	154	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	135	first strand
Strand 2	E	219	228	parallel
Strand 3	E	176	184	anti-parallel
Strand 4	E	192	198	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	9	first strand
Strand 2	F	12	16	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	125	first strand
Strand 2	F	251	258	anti-parallel
Strand 3	F	162	172	anti-parallel
Strand 4	F	233	235	anti-parallel
Strand 5	F	129	131	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	125	first strand
Strand 2	F	251	258	anti-parallel
Strand 3	F	162	172	anti-parallel
Strand 4	F	203	212	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	135	first strand
Strand 2	F	219	228	parallel
Strand 3	F	147	154	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	135	first strand
Strand 2	F	219	228	parallel
Strand 3	F	176	184	anti-parallel
Strand 4	F	192	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GJT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJT