Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GJU entry

There are 3 chains in PDB entry 6GJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 449PRO 638
B
 GLN 1ALA 118
C
 GLN 1SER 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6GJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
462 465Right-handed 310
Helix 2
AA2
A
466 475Right-handed alpha
Helix 3
AA3
A
503 508Right-handed alpha
Helix 4
AA4
A
513 524Right-handed alpha
Helix 5
AA5
A
526 533Right-handed alpha
Helix 6
AA6
A
535 538Right-handed 310
Helix 7
AA7
A
549 564Right-handed alpha
Helix 8
AA8
A
579 591Right-handed alpha
Helix 9
AA9
A
606 613Right-handed alpha
Helix 10
AB1
A
629 635Right-handed alpha
Helix 11
AB2
B
85 89Right-handed 310
Helix 12
AB3
C
86 90Right-handed 310
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There are 8 sheets in PDB entry 6GJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
568 572parallel
Strand 3
A
600 603parallel
Strand 4
A
453 458parallel
Strand 5
A
615 619parallel
Strand 6
A
625 628anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 501first strand
Strand 2
A
540 541anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
18 26anti-parallel
Strand 3
B
76 81anti-parallel
Strand 4
B
66 71anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
111 116parallel
Strand 3
B
90 99anti-parallel
Strand 4
B
31 39anti-parallel
Strand 5
B
45 52anti-parallel
Strand 6
B
55 58anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
111 116parallel
Strand 3
B
90 99anti-parallel
Strand 4
B
103 107anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
67 72anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
114 119parallel
Strand 3
C
91 102anti-parallel
Strand 4
C
30 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
57 59anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
114 119parallel
Strand 3
C
91 102anti-parallel
Strand 4
C
105 110anti-parallel
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