Analysis of interatomic Contacts of Structural Units in PDB entry:
6GJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GJV entry

There are 4 chains in PDB entry 6GJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ALA 467
B
MET 1ALA 467
C
HIS 0ALA 467
D
MET 1ARG 84
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are131 helices in PDB entry 6GJV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
10 12Right-handed 310
Helix 2
AA2
A
24 28Right-handed 310
Helix 3
AA3
A
54 65Right-handed alpha
Helix 4
AA4
A
75 88Right-handed alpha
Helix 5
AA5
A
105 117Right-handed alpha
Helix 6
AA6
A
135 139Right-handed 310
Helix 7
AA7
A
147 152Right-handed alpha
Helix 8
AA8
A
154 158Right-handed 310
Helix 9
AA9
A
166 177Right-handed alpha
Helix 10
AB1
A
197 203Right-handed alpha
Helix 11
AB2
A
228 239Right-handed alpha
Helix 12
AB3
A
253 267Right-handed alpha
Helix 13
AB4
A
279 289Right-handed alpha
Helix 14
AB5
A
304 311Right-handed alpha
Helix 15
AB6
A
315 328Right-handed alpha
Helix 16
AB7
A
342 352Right-handed alpha
Helix 17
AB8
A
428 448Right-handed alpha
Helix 18
AB9
A
451 458Right-handed alpha
Helix 19
AC1
B
10 12Right-handed 310
Helix 20
AC2
B
24 28Right-handed 310
Helix 21
AC3
B
54 65Right-handed alpha
Helix 22
AC4
B
75 88Right-handed alpha
Helix 23
AC5
B
105 117Right-handed alpha
Helix 24
AC6
B
156 158Right-handed 310
Helix 25
AC7
B
166 178Right-handed alpha
Helix 26
AC8
B
197 203Right-handed alpha
Helix 27
AC9
B
228 239Right-handed alpha
Helix 28
AD1
B
253 267Right-handed alpha
Helix 29
AD2
B
279 290Right-handed alpha
Helix 30
AD3
B
304 311Right-handed alpha
Helix 31
AD4
B
315 327Right-handed alpha
Helix 32
AD5
B
342 353Right-handed alpha
Helix 33
AD6
B
428 448Right-handed alpha
Helix 34
AD7
B
451 458Right-handed alpha
Helix 35
AD8
C
10 12Right-handed 310
Helix 36
AD9
C
24 28Right-handed 310
Helix 37
AE1
C
54 65Right-handed alpha
Helix 38
AE2
C
75 89Right-handed alpha
Helix 39
AE3
C
105 117Right-handed alpha
Helix 40
AE4
C
134 139Right-handed alpha
Helix 41
AE5
C
147 152Right-handed alpha
Helix 42
AE6
C
156 158Right-handed 310
Helix 43
AE7
C
166 178Right-handed alpha
Helix 44
AE8
C
197 204Right-handed alpha
Helix 45
AE9
C
228 239Right-handed alpha
Helix 46
AF1
C
253 267Right-handed alpha
Helix 47
AF2
C
279 290Right-handed alpha
Helix 48
AF3
C
304 311Right-handed alpha
Helix 49
AF4
C
315 328Right-handed alpha
Helix 50
AF5
C
342 352Right-handed alpha
Helix 51
AF6
C
428 448Right-handed alpha
Helix 52
AF7
C
451 458Right-handed alpha
Helix 53
AF8
D
10 12Right-handed 310
Helix 54
AF9
D
24 28Right-handed 310
Helix 55
AG1
D
54 64Right-handed alpha
Helix 56
AG2
D
75 89Right-handed alpha
Helix 57
AG3
D
228 239Right-handed alpha
Helix 58
AG4
D
253 267Right-handed alpha
Helix 59
AG5
D
279 289Right-handed alpha
Helix 60
AG6
D
304 311Right-handed alpha
Helix 61
AG7
D
315 328Right-handed alpha
Helix 62
AG8
D
342 352Right-handed alpha
Helix 63
AG9
D
428 448Right-handed alpha
Helix 64
AH1
D
451 458Right-handed alpha
Helix 65
AH2
E
10 12Right-handed 310
Helix 66
AH3
E
24 28Right-handed 310
Helix 67
AH4
E
54 65Right-handed alpha
Helix 68
AH5
E
75 88Right-handed alpha
Helix 69
AH6
E
105 117Right-handed alpha
Helix 70
AH7
E
134 139Right-handed alpha
Helix 71
AH8
E
147 152Right-handed alpha
Helix 72
AH9
E
156 158Right-handed 310
Helix 73
AI1
E
166 178Right-handed alpha
Helix 74
AI2
E
197 203Right-handed alpha
Helix 75
AI3
E
228 239Right-handed alpha
Helix 76
AI4
E
253 267Right-handed alpha
Helix 77
AI5
E
279 289Right-handed alpha
Helix 78
AI6
E
304 311Right-handed alpha
Helix 79
AI7
E
315 328Right-handed alpha
Helix 80
AI8
E
342 352Right-handed alpha
Helix 81
AI9
E
428 448Right-handed alpha
Helix 82
AJ1
E
451 458Right-handed alpha
Helix 83
AJ2
F
10 12Right-handed 310
Helix 84
AJ3
F
24 28Right-handed 310
Helix 85
AJ4
F
54 65Right-handed alpha
Helix 86
AJ5
F
75 89Right-handed alpha
Helix 87
AJ6
F
105 117Right-handed alpha
Helix 88
AJ7
F
134 140Right-handed alpha
Helix 89
AJ8
F
147 151Right-handed 310
Helix 90
AJ9
F
156 158Right-handed 310
Helix 91
AK1
F
166 178Right-handed alpha
Helix 92
AK2
F
197 204Right-handed alpha
Helix 93
AK3
F
228 239Right-handed alpha
Helix 94
AK4
F
253 267Right-handed alpha
Helix 95
AK5
F
279 289Right-handed alpha
Helix 96
AK6
F
304 311Right-handed alpha
Helix 97
AK7
F
315 328Right-handed alpha
Helix 98
AK8
F
342 352Right-handed alpha
Helix 99
AK9
F
428 448Right-handed alpha
Helix 100
AL1
F
451 458Right-handed alpha
Helix 101
AL2
G
10 12Right-handed 310
Helix 102
AL3
G
24 28Right-handed 310
Helix 103
AL4
G
54 65Right-handed alpha
Helix 104
AL5
G
75 88Right-handed alpha
Helix 105
AL6
G
105 117Right-handed alpha
Helix 106
AL7
G
135 139Right-handed 310
Helix 107
AL8
G
147 152Right-handed alpha
Helix 108
AL9
G
156 158Right-handed 310
Helix 109
AM1
G
166 177Right-handed alpha
Helix 110
AM2
G
197 203Right-handed alpha
Helix 111
AM3
G
228 239Right-handed alpha
Helix 112
AM4
G
253 267Right-handed alpha
Helix 113
AM5
G
279 290Right-handed alpha
Helix 114
AM6
G
304 311Right-handed alpha
Helix 115
AM7
G
315 328Right-handed alpha
Helix 116
AM8
G
342 352Right-handed alpha
Helix 117
AM9
G
428 448Right-handed alpha
Helix 118
AN1
G
451 458Right-handed alpha
Helix 119
AN2
H
10 12Right-handed 310
Helix 120
AN3
H
24 28Right-handed 310
Helix 121
AN4
H
54 64Right-handed alpha
Helix 122
AN5
H
75 89Right-handed alpha
Helix 123
AN6
H
228 239Right-handed alpha
Helix 124
AN7
H
253 267Right-handed alpha
Helix 125
AN8
H
279 289Right-handed alpha
Helix 126
AN9
H
304 311Right-handed alpha
Helix 127
AO1
H
315 328Right-handed alpha
Helix 128
AO2
H
342 353Right-handed alpha
Helix 129
AO3
H
360 364Right-handed 310
Helix 130
AO4
H
428 448Right-handed alpha
Helix 131
AO5
H
451 458Right-handed alpha
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There are 44 sheets in PDB entry 6GJV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 7first strand
Strand 2
C
461 463parallel
Strand 3
C
14 16anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
14 16first strand
Strand 2
A
461 463anti-parallel
Strand 3
F
4 7parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
32 33first strand
Strand 2
A
39 40anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
44 46first strand
Strand 2
A
67 70parallel
Strand 3
A
220 223parallel
Strand 4
A
243 247parallel
Strand 5
A
271 277parallel
Strand 6
A
293 296parallel
Strand 7
A
334 337parallel
Strand 8
A
356 359parallel
Strand 9
A
44 46parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
122 124first strand
Strand 2
A
129 132anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
160 162first strand
Strand 2
A
181 185parallel
Strand 3
A
191 196anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
372 376first strand
Strand 2
A
379 383anti-parallel
Strand 3
A
423 424anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 8first strand
Strand 2
G
461 464parallel
Strand 3
G
14 16anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
14 16first strand
Strand 2
B
461 463anti-parallel
Strand 3
E
4 7parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
32 33first strand
Strand 2
B
39 40anti-parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
44 46first strand
Strand 2
B
67 70parallel
Strand 3
B
220 223parallel
Strand 4
B
243 247parallel
Strand 5
B
271 277parallel
Strand 6
B
293 296parallel
Strand 7
B
334 337parallel
Strand 8
B
356 359parallel
Strand 9
B
44 46parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
121 123first strand
Strand 2
B
131 133anti-parallel
Strand 3
B
153 154anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
160 162first strand
Strand 2
B
181 185parallel
Strand 3
B
193 196anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
372 376first strand
Strand 2
B
379 383anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4 7first strand
Strand 2
D
461 463parallel
Strand 3
D
14 16anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
32 33first strand
Strand 2
C
39 40anti-parallel
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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
44 46first strand
Strand 2
C
67 70parallel
Strand 3
C
220 223parallel
Strand 4
C
243 247parallel
Strand 5
C
271 277parallel
Strand 6
C
293 296parallel
Strand 7
C
334 337parallel
Strand 8
C
356 359parallel
Strand 9
C
44 46parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
93 94first strand
Strand 2
C
191 196anti-parallel
Strand 3
C
181 185anti-parallel
Strand 4
C
160 162parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
121 124first strand
Strand 2
C
129 133anti-parallel
Strand 3
C
153 154anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
372 376first strand
Strand 2
C
379 383anti-parallel
Strand 3
C
423 424anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4 7first strand
Strand 2
F
461 463parallel
Strand 3
F
14 16anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
32 33first strand
Strand 2
D
39 40anti-parallel
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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
44 46first strand
Strand 2
D
67 70parallel
Strand 3
D
220 223parallel
Strand 4
D
243 247parallel
Strand 5
D
271 277parallel
Strand 6
D
293 296parallel
Strand 7
D
334 337parallel
Strand 8
D
356 359parallel
Strand 9
D
44 46parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
372 376first strand
Strand 2
D
379 383anti-parallel
Strand 3
D
423 424anti-parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
14 16first strand
Strand 2
E
461 463anti-parallel
Strand 3
H
4 7parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
32 33first strand
Strand 2
E
39 40anti-parallel
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There are 9 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
44 46first strand
Strand 2
E
67 70parallel
Strand 3
E
220 223parallel
Strand 4
E
243 247parallel
Strand 5
E
271 277parallel
Strand 6
E
293 296parallel
Strand 7
E
334 337parallel
Strand 8
E
356 359parallel
Strand 9
E
44 46parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
93 94first strand
Strand 2
E
191 196anti-parallel
Strand 3
E
181 185anti-parallel
Strand 4
E
160 162parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
121 125first strand
Strand 2
E
128 133anti-parallel
Strand 3
E
153 154anti-parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
372 376first strand
Strand 2
E
379 383anti-parallel
Strand 3
E
423 424anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
32 35first strand
Strand 2
F
38 40anti-parallel
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There are 9 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
44 46first strand
Strand 2
F
67 70parallel
Strand 3
F
220 223parallel
Strand 4
F
243 247parallel
Strand 5
F
271 277parallel
Strand 6
F
293 296parallel
Strand 7
F
334 337parallel
Strand 8
F
356 359parallel
Strand 9
F
44 46parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
121 125first strand
Strand 2
F
128 133anti-parallel
Strand 3
F
153 154anti-parallel
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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
160 162first strand
Strand 2
F
181 185parallel
Strand 3
F
191 196anti-parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
372 376first strand
Strand 2
F
379 383anti-parallel
Strand 3
F
423 424anti-parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
4 8first strand
Strand 2
H
461 464parallel
Strand 3
H
14 16anti-parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
32 35first strand
Strand 2
G
38 40anti-parallel
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There are 9 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
44 46first strand
Strand 2
G
67 70parallel
Strand 3
G
220 223parallel
Strand 4
G
243 247parallel
Strand 5
G
271 277parallel
Strand 6
G
293 296parallel
Strand 7
G
334 337parallel
Strand 8
G
356 359parallel
Strand 9
G
44 46parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
93 94first strand
Strand 2
G
191 196anti-parallel
Strand 3
G
181 185anti-parallel
Strand 4
G
160 162parallel
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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
121 125first strand
Strand 2
G
128 133anti-parallel
Strand 3
G
153 154anti-parallel
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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
372 376first strand
Strand 2
G
379 383anti-parallel
Strand 3
G
423 424anti-parallel
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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
32 33first strand
Strand 2
H
39 40anti-parallel
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There are 9 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
44 46first strand
Strand 2
H
67 70parallel
Strand 3
H
220 223parallel
Strand 4
H
243 247parallel
Strand 5
H
271 277parallel
Strand 6
H
293 296parallel
Strand 7
H
334 337parallel
Strand 8
H
356 359parallel
Strand 9
H
44 46parallel
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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
372 376first strand
Strand 2
H
379 383anti-parallel
Strand 3
H
423 424anti-parallel
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