Analysis of interatomic Contacts of Structural Units in PDB entry:
6GK7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GK7 entry

There are 3 chains in PDB entry 6GK7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
ILE 2ARG 217
H
GLN 1LYS 223
A
ILE 308VAL 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6GK7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
L
85 89Right-handed 310
Helix 2
AA2
L
127 134Right-handed alpha
Helix 3
AA3
L
189 195Right-handed alpha
Helix 4
AA4
H
28 30Right-handed 310
Helix 5
AA5
H
87 91Right-handed 310
Helix 6
AA6
H
136 138Right-handed 310
Helix 7
AA7
H
165 167Right-handed 310
Helix 8
AA8
H
196 200Right-handed 310
Helix 9
AA9
H
210 213Right-handed 310
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There are 11 sheets in PDB entry 6GK7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
76 81anti-parallel
Strand 4
L
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 14first strand
Strand 2
L
108 113parallel
Strand 3
L
90 96anti-parallel
Strand 4
L
39 44anti-parallel
Strand 5
L
51 55anti-parallel
Strand 6
L
59 60anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
30 31first strand
Strand 2
L
36 37anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
120 124first strand
Strand 2
L
135 145anti-parallel
Strand 3
L
179 188anti-parallel
Strand 4
L
165 169anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
159 160first strand
Strand 2
L
151 156anti-parallel
Strand 3
L
197 203anti-parallel
Strand 4
L
211 216anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
69 73anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
116 120parallel
Strand 3
H
92 100anti-parallel
Strand 4
H
32 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
116 120parallel
Strand 3
H
92 100anti-parallel
Strand 4
H
109 112anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
129 133first strand
Strand 2
H
144 154anti-parallel
Strand 3
H
185 194anti-parallel
Strand 4
H
172 174anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
140 141first strand
Strand 2
H
144 154anti-parallel
Strand 3
H
185 194anti-parallel
Strand 4
H
178 179anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
160 163first strand
Strand 2
H
204 209anti-parallel
Strand 3
H
214 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il