Analysis of interatomic Contacts of Structural Units in PDB entry:
6GK9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GK9 entry

There are 4 chains in PDB entry 6GK9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	ALA 467
B	MET 1	GLY 466
C	MET 1	ALA 467
D	MET 1	TYR 116

There are130 helices in PDB entry 6GK9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	12	Right-handed 310
Helix 2	AA2	A	24	28	Right-handed 310
Helix 3	AA3	A	54	65	Right-handed alpha
Helix 4	AA4	A	75	88	Right-handed alpha
Helix 5	AA5	A	105	117	Right-handed alpha
Helix 6	AA6	A	134	139	Right-handed alpha
Helix 7	AA7	A	147	152	Right-handed alpha
Helix 8	AA8	A	156	158	Right-handed 310
Helix 9	AA9	A	166	178	Right-handed alpha
Helix 10	AB1	A	197	202	Right-handed alpha
Helix 11	AB2	A	228	239	Right-handed alpha
Helix 12	AB3	A	253	267	Right-handed alpha
Helix 13	AB4	A	279	290	Right-handed alpha
Helix 14	AB5	A	304	311	Right-handed alpha
Helix 15	AB6	A	315	328	Right-handed alpha
Helix 16	AB7	A	342	352	Right-handed alpha
Helix 17	AB8	A	428	448	Right-handed alpha
Helix 18	AB9	A	451	458	Right-handed alpha
Helix 19	AC1	B	10	12	Right-handed 310
Helix 20	AC2	B	24	28	Right-handed 310
Helix 21	AC3	B	54	65	Right-handed alpha
Helix 22	AC4	B	75	89	Right-handed alpha
Helix 23	AC5	B	105	117	Right-handed alpha
Helix 24	AC6	B	136	140	Right-handed 310
Helix 25	AC7	B	147	151	Right-handed 310
Helix 26	AC8	B	156	158	Right-handed 310
Helix 27	AC9	B	166	178	Right-handed alpha
Helix 28	AD1	B	197	203	Right-handed alpha
Helix 29	AD2	B	228	239	Right-handed alpha
Helix 30	AD3	B	253	267	Right-handed alpha
Helix 31	AD4	B	279	289	Right-handed alpha
Helix 32	AD5	B	304	311	Right-handed alpha
Helix 33	AD6	B	315	328	Right-handed alpha
Helix 34	AD7	B	342	352	Right-handed alpha
Helix 35	AD8	B	428	448	Right-handed alpha
Helix 36	AD9	B	451	458	Right-handed alpha
Helix 37	AE1	C	10	12	Right-handed 310
Helix 38	AE2	C	24	28	Right-handed 310
Helix 39	AE3	C	54	65	Right-handed alpha
Helix 40	AE4	C	75	88	Right-handed alpha
Helix 41	AE5	C	108	117	Right-handed alpha
Helix 42	AE6	C	166	178	Right-handed alpha
Helix 43	AE7	C	197	203	Right-handed alpha
Helix 44	AE8	C	228	239	Right-handed alpha
Helix 45	AE9	C	253	267	Right-handed alpha
Helix 46	AF1	C	279	289	Right-handed alpha
Helix 47	AF2	C	304	311	Right-handed alpha
Helix 48	AF3	C	315	328	Right-handed alpha
Helix 49	AF4	C	342	352	Right-handed alpha
Helix 50	AF5	C	428	448	Right-handed alpha
Helix 51	AF6	C	451	458	Right-handed alpha
Helix 52	AF7	D	10	12	Right-handed 310
Helix 53	AF8	D	24	28	Right-handed 310
Helix 54	AF9	D	54	65	Right-handed alpha
Helix 55	AG1	D	75	88	Right-handed alpha
Helix 56	AG2	D	105	117	Right-handed alpha
Helix 57	AG3	D	135	139	Right-handed 310
Helix 58	AG4	D	147	152	Right-handed alpha
Helix 59	AG5	D	156	158	Right-handed 310
Helix 60	AG6	D	166	177	Right-handed alpha
Helix 61	AG7	D	197	202	Right-handed alpha
Helix 62	AG8	D	228	239	Right-handed alpha
Helix 63	AG9	D	253	267	Right-handed alpha
Helix 64	AH1	D	279	289	Right-handed alpha
Helix 65	AH2	D	304	311	Right-handed alpha
Helix 66	AH3	D	315	328	Right-handed alpha
Helix 67	AH4	D	342	352	Right-handed alpha
Helix 68	AH5	D	360	364	Right-handed 310
Helix 69	AH6	D	428	448	Right-handed alpha
Helix 70	AH7	D	451	458	Right-handed alpha
Helix 71	AH8	E	10	12	Right-handed 310
Helix 72	AH9	E	24	28	Right-handed 310
Helix 73	AI1	E	54	65	Right-handed alpha
Helix 74	AI2	E	75	89	Right-handed alpha
Helix 75	AI3	E	105	117	Right-handed alpha
Helix 76	AI4	E	147	151	Right-handed 310
Helix 77	AI5	E	156	158	Right-handed 310
Helix 78	AI6	E	166	178	Right-handed alpha
Helix 79	AI7	E	197	203	Right-handed alpha
Helix 80	AI8	E	228	239	Right-handed alpha
Helix 81	AI9	E	253	267	Right-handed alpha
Helix 82	AJ1	E	279	289	Right-handed alpha
Helix 83	AJ2	E	304	311	Right-handed alpha
Helix 84	AJ3	E	315	328	Right-handed alpha
Helix 85	AJ4	E	342	353	Right-handed alpha
Helix 86	AJ5	E	428	448	Right-handed alpha
Helix 87	AJ6	E	451	458	Right-handed alpha
Helix 88	AJ7	F	10	12	Right-handed 310
Helix 89	AJ8	F	24	28	Right-handed 310
Helix 90	AJ9	F	54	65	Right-handed alpha
Helix 91	AK1	F	75	89	Right-handed alpha
Helix 92	AK2	F	228	240	Right-handed alpha
Helix 93	AK3	F	253	267	Right-handed alpha
Helix 94	AK4	F	279	290	Right-handed alpha
Helix 95	AK5	F	304	311	Right-handed alpha
Helix 96	AK6	F	315	328	Right-handed alpha
Helix 97	AK7	F	342	352	Right-handed alpha
Helix 98	AK8	F	360	364	Right-handed 310
Helix 99	AK9	F	428	448	Right-handed alpha
Helix 100	AL1	F	451	458	Right-handed alpha
Helix 101	AL2	G	10	12	Right-handed 310
Helix 102	AL3	G	24	28	Right-handed 310
Helix 103	AL4	G	54	65	Right-handed alpha
Helix 104	AL5	G	75	89	Right-handed alpha
Helix 105	AL6	G	228	240	Right-handed alpha
Helix 106	AL7	G	253	267	Right-handed alpha
Helix 107	AL8	G	279	290	Right-handed alpha
Helix 108	AL9	G	304	311	Right-handed alpha
Helix 109	AM1	G	315	328	Right-handed alpha
Helix 110	AM2	G	342	352	Right-handed alpha
Helix 111	AM3	G	428	448	Right-handed alpha
Helix 112	AM4	G	451	458	Right-handed alpha
Helix 113	AM5	H	10	12	Right-handed 310
Helix 114	AM6	H	24	28	Right-handed 310
Helix 115	AM7	H	54	65	Right-handed alpha
Helix 116	AM8	H	75	89	Right-handed alpha
Helix 117	AM9	H	105	117	Right-handed alpha
Helix 118	AN1	H	135	139	Right-handed 310
Helix 119	AN2	H	147	152	Right-handed alpha
Helix 120	AN3	H	154	158	Right-handed 310
Helix 121	AN4	H	166	177	Right-handed alpha
Helix 122	AN5	H	197	203	Right-handed alpha
Helix 123	AN6	H	228	239	Right-handed alpha
Helix 124	AN7	H	253	267	Right-handed alpha
Helix 125	AN8	H	279	289	Right-handed alpha
Helix 126	AN9	H	304	311	Right-handed alpha
Helix 127	AO1	H	315	328	Right-handed alpha
Helix 128	AO2	H	342	353	Right-handed alpha
Helix 129	AO3	H	428	448	Right-handed alpha
Helix 130	AO4	H	451	458	Right-handed alpha

There are 43 sheets in PDB entry 6GK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	C	461	463	parallel
Strand 3	C	14	16	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	461	464	anti-parallel
Strand 3	F	4	8	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	39	40	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	67	70	parallel
Strand 3	A	220	223	parallel
Strand 4	A	243	247	parallel
Strand 5	A	271	277	parallel
Strand 6	A	293	296	parallel
Strand 7	A	334	337	parallel
Strand 8	A	356	359	parallel
Strand 9	A	44	46	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	125	first strand
Strand 2	A	128	133	anti-parallel
Strand 3	A	153	154	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	162	first strand
Strand 2	A	181	185	parallel
Strand 3	A	191	196	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	375	first strand
Strand 2	A	380	383	anti-parallel
Strand 3	A	423	424	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	G	461	463	parallel
Strand 3	G	14	16	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	461	463	anti-parallel
Strand 3	E	4	7	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	39	40	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	67	70	parallel
Strand 3	B	220	223	parallel
Strand 4	B	243	247	parallel
Strand 5	B	271	277	parallel
Strand 6	B	293	296	parallel
Strand 7	B	334	337	parallel
Strand 8	B	356	359	parallel
Strand 9	B	44	46	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	125	first strand
Strand 2	B	128	133	anti-parallel
Strand 3	B	153	154	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	181	185	parallel
Strand 3	B	191	196	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	375	first strand
Strand 2	B	380	383	anti-parallel
Strand 3	B	423	424	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	D	461	463	parallel
Strand 3	D	14	16	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	38	40	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	46	first strand
Strand 2	C	67	70	parallel
Strand 3	C	220	223	parallel
Strand 4	C	243	247	parallel
Strand 5	C	271	277	parallel
Strand 6	C	293	296	parallel
Strand 7	C	334	337	parallel
Strand 8	C	356	359	parallel
Strand 9	C	44	46	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	182	first strand
Strand 2	C	195	196	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	376	first strand
Strand 2	C	379	383	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	F	461	463	parallel
Strand 3	F	14	16	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	35	first strand
Strand 2	D	38	40	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	46	first strand
Strand 2	D	67	70	parallel
Strand 3	D	220	223	parallel
Strand 4	D	243	247	parallel
Strand 5	D	271	277	parallel
Strand 6	D	293	296	parallel
Strand 7	D	334	337	parallel
Strand 8	D	356	359	parallel
Strand 9	D	44	46	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	125	first strand
Strand 2	D	128	133	anti-parallel
Strand 3	D	153	154	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	162	first strand
Strand 2	D	181	185	parallel
Strand 3	D	191	196	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	375	first strand
Strand 2	D	380	383	anti-parallel
Strand 3	D	423	424	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	16	first strand
Strand 2	E	461	463	anti-parallel
Strand 3	H	4	7	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	38	40	anti-parallel

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There are 9 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	46	first strand
Strand 2	E	67	70	parallel
Strand 3	E	220	223	parallel
Strand 4	E	243	247	parallel
Strand 5	E	271	277	parallel
Strand 6	E	293	296	parallel
Strand 7	E	334	337	parallel
Strand 8	E	356	359	parallel
Strand 9	E	44	46	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	125	first strand
Strand 2	E	128	133	anti-parallel
Strand 3	E	153	154	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	162	first strand
Strand 2	E	181	185	parallel
Strand 3	E	191	196	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	372	376	first strand
Strand 2	E	379	383	anti-parallel
Strand 3	E	423	424	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	35	first strand
Strand 2	F	38	40	anti-parallel

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There are 9 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	46	first strand
Strand 2	F	67	70	parallel
Strand 3	F	220	223	parallel
Strand 4	F	243	247	parallel
Strand 5	F	271	277	parallel
Strand 6	F	293	296	parallel
Strand 7	F	334	337	parallel
Strand 8	F	356	359	parallel
Strand 9	F	44	46	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	372	376	first strand
Strand 2	F	379	383	anti-parallel
Strand 3	F	423	424	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	H	461	463	parallel
Strand 3	H	14	16	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	35	first strand
Strand 2	G	38	40	anti-parallel

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There are 9 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	46	first strand
Strand 2	G	67	70	parallel
Strand 3	G	220	223	parallel
Strand 4	G	243	247	parallel
Strand 5	G	271	277	parallel
Strand 6	G	293	296	parallel
Strand 7	G	334	337	parallel
Strand 8	G	356	359	parallel
Strand 9	G	44	46	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	372	375	first strand
Strand 2	G	380	383	anti-parallel
Strand 3	G	423	424	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	35	first strand
Strand 2	H	38	40	anti-parallel

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There are 9 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	46	first strand
Strand 2	H	67	70	parallel
Strand 3	H	220	223	parallel
Strand 4	H	243	247	parallel
Strand 5	H	271	277	parallel
Strand 6	H	293	296	parallel
Strand 7	H	334	337	parallel
Strand 8	H	356	359	parallel
Strand 9	H	44	46	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	124	first strand
Strand 2	H	129	133	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	162	first strand
Strand 2	H	181	185	parallel
Strand 3	H	193	196	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	372	375	first strand
Strand 2	H	380	383	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GK9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GK9