Analysis of interatomic Contacts of Structural Units in PDB entry:
6GKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GKF entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 24 chains in PDB entry 6GKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3THR 234
C
 VAL 2THR 234
E
 VAL 2THR 234
G
 VAL 2THR 234
B
 VAL 2THR 234
D
 VAL 2THR 234
F
 VAL 2LEU 232
H
 VAL 2THR 234
I
 TYR 136LEU 138
I
 LEU 140PRO 143
J
 TYR 136LEU 138
J
 LEU 140PHE 142
K
 TYR 136LEU 138
K
 LEU 140PRO 143
L
 ASP 137LEU 138
L
 LEU 140PHE 142
M
 TYR 136LEU 138
M
 LEU 140PRO 143
N
 ASP 137LEU 138
N
 LEU 140PHE 142
O
 TYR 136LEU 138
O
 LEU 140PRO 143
P
 TYR 136LEU 138
P
 LEU 140PRO 143
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 6GKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 17Right-handed alpha
Helix 2
AA2
A
19 32Right-handed alpha
Helix 3
AA3
A
38 70Right-handed alpha
Helix 4
AA4
A
77 107Right-handed alpha
Helix 5
AA5
A
117 136Right-handed alpha
Helix 6
AA6
A
139 165Right-handed alpha
Helix 7
AA7
A
169 186Right-handed alpha
Helix 8
AA8
A
189 207Right-handed alpha
Helix 9
AA9
A
208 211Right-handed 310
Helix 10
AB1
A
216 233Right-handed alpha
Helix 11
AB2
C
3 17Right-handed alpha
Helix 12
AB3
C
19 32Right-handed alpha
Helix 13
AB4
C
38 72Right-handed alpha
Helix 14
AB5
C
77 107Right-handed alpha
Helix 15
AB6
C
116 138Right-handed alpha
Helix 16
AB7
C
139 165Right-handed alpha
Helix 17
AB8
C
169 186Right-handed alpha
Helix 18
AB9
C
189 207Right-handed alpha
Helix 19
AC1
C
208 211Right-handed 310
Helix 20
AC2
C
215 234Right-handed alpha
Helix 21
AC3
E
3 17Right-handed alpha
Helix 22
AC4
E
19 32Right-handed alpha
Helix 23
AC5
E
38 74Right-handed alpha
Helix 24
AC6
E
77 107Right-handed alpha
Helix 25
AC7
E
116 138Right-handed alpha
Helix 26
AC8
E
139 165Right-handed alpha
Helix 27
AC9
E
169 186Right-handed alpha
Helix 28
AD1
E
189 206Right-handed alpha
Helix 29
AD2
E
207 211Right-handed 310
Helix 30
AD3
E
216 233Right-handed alpha
Helix 31
AD4
G
3 17Right-handed alpha
Helix 32
AD5
G
19 32Right-handed alpha
Helix 33
AD6
G
38 70Right-handed alpha
Helix 34
AD7
G
75 107Right-handed alpha
Helix 35
AD8
G
116 136Right-handed alpha
Helix 36
AD9
G
140 165Right-handed alpha
Helix 37
AE1
G
169 186Right-handed alpha
Helix 38
AE2
G
189 206Right-handed alpha
Helix 39
AE3
G
221 234Right-handed alpha
Helix 40
AE4
B
3 17Right-handed alpha
Helix 41
AE5
B
19 32Right-handed alpha
Helix 42
AE6
B
38 70Right-handed alpha
Helix 43
AE7
B
71 74Right-handed 310
Helix 44
AE8
B
75 108Right-handed alpha
Helix 45
AE9
B
117 138Right-handed alpha
Helix 46
AF1
B
140 165Right-handed alpha
Helix 47
AF2
B
169 186Right-handed alpha
Helix 48
AF3
B
189 206Right-handed alpha
Helix 49
AF4
B
215 233Right-handed alpha
Helix 50
AF5
D
3 17Right-handed alpha
Helix 51
AF6
D
19 32Right-handed alpha
Helix 52
AF7
D
38 71Right-handed alpha
Helix 53
AF8
D
75 107Right-handed alpha
Helix 54
AF9
D
117 136Right-handed alpha
Helix 55
AG1
D
139 165Right-handed alpha
Helix 56
AG2
D
169 186Right-handed alpha
Helix 57
AG3
D
189 207Right-handed alpha
Helix 58
AG4
D
217 234Right-handed alpha
Helix 59
AG5
F
3 17Right-handed alpha
Helix 60
AG6
F
19 32Right-handed alpha
Helix 61
AG7
F
38 71Right-handed alpha
Helix 62
AG8
F
78 107Right-handed alpha
Helix 63
AG9
F
117 138Right-handed alpha
Helix 64
AH1
F
140 164Right-handed alpha
Helix 65
AH2
F
169 186Right-handed alpha
Helix 66
AH3
F
189 206Right-handed alpha
Helix 67
AH4
F
216 232Right-handed alpha
Helix 68
AH5
H
3 17Right-handed alpha
Helix 69
AH6
H
19 33Right-handed alpha
Helix 70
AH7
H
38 68Right-handed alpha
Helix 71
AH8
H
78 107Right-handed alpha
Helix 72
AH9
H
116 136Right-handed alpha
Helix 73
AI1
H
140 165Right-handed alpha
Helix 74
AI2
H
169 186Right-handed alpha
Helix 75
AI3
H
189 207Right-handed alpha
Helix 76
AI4
H
217 234Right-handed alpha
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There are no sheets in PDB entry 6GKF
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