Analysis of interatomic Contacts of Structural Units in PDB entry:
6GKH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GKH entry

There are 3 chains in PDB entry 6GKH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 306LEU 1020
X
 G 1 A 15
Y
 U 1 C 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6GKH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
310 318Right-handed alpha
Helix 2
AA2
A
319 322Right-handed 310
Helix 3
AA3
A
335 354Right-handed alpha
Helix 4
AA4
A
367 376Right-handed alpha
Helix 5
AA5
A
378 383Right-handed alpha
Helix 6
AA6
A
400 406Right-handed alpha
Helix 7
AA7
A
415 428Right-handed alpha
Helix 8
AA8
A
434 438Right-handed 310
Helix 9
AA9
A
446 449Right-handed 310
Helix 10
AB1
A
453 474Right-handed alpha
Helix 11
AB2
A
499 513Right-handed alpha
Helix 12
AB3
A
525 533Right-handed alpha
Helix 13
AB4
A
551 567Right-handed alpha
Helix 14
AB5
A
576 594Right-handed alpha
Helix 15
AB6
A
598 616Right-handed alpha
Helix 16
AB7
A
619 643Right-handed alpha
Helix 17
AB8
A
671 692Right-handed alpha
Helix 18
AB9
A
698 716Right-handed alpha
Helix 19
AC1
A
728 741Right-handed alpha
Helix 20
AC2
A
742 747Right-handed alpha
Helix 21
AC3
A
767 780Right-handed alpha
Helix 22
AC4
A
789 793Right-handed 310
Helix 23
AC5
A
812 821Right-handed alpha
Helix 24
AC6
A
839 863Right-handed alpha
Helix 25
AC7
A
865 890Right-handed alpha
Helix 26
AC8
A
932 937Right-handed alpha
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There are 6 sheets in PDB entry 6GKH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
484 489parallel
Strand 3
A
440 444parallel
Strand 4
A
360 364parallel
Strand 5
A
410 414parallel
Strand 6
A
389 390parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 543first strand
Strand 2
A
832 835parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 752first strand
Strand 2
A
785 788parallel
Strand 3
A
721 724parallel
Strand 4
A
803 804parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
913 915first strand
Strand 2
A
903 907anti-parallel
Strand 3
A
987 991anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
920 923first strand
Strand 2
A
927 930anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
940 942first strand
Strand 2
A
959 961anti-parallel
Strand 3
A
967 974anti-parallel
Strand 4
A
977 982anti-parallel
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