Analysis of interatomic Contacts of Structural Units in PDB entry:
6GKR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GKR entry

There are 3 chains in PDB entry 6GKR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 5	MET 311
B	GLU 6	GLY 312
C	GLU 6	MET 311

There are 28 helices in PDB entry 6GKR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	35	Right-handed alpha
Helix 2	AA2	A	57	73	Right-handed alpha
Helix 3	AA3	A	79	95	Right-handed alpha
Helix 4	AA4	A	164	179	Right-handed alpha
Helix 5	AA5	A	214	217	Right-handed 310
Helix 6	AA6	A	221	234	Right-handed alpha
Helix 7	AA7	A	245	251	Right-handed alpha
Helix 8	AA8	A	281	296	Right-handed alpha
Helix 9	AA9	A	299	304	Right-handed 310
Helix 10	AB1	B	30	35	Right-handed alpha
Helix 11	AB2	B	57	73	Right-handed alpha
Helix 12	AB3	B	79	95	Right-handed alpha
Helix 13	AB4	B	164	179	Right-handed alpha
Helix 14	AB5	B	214	217	Right-handed 310
Helix 15	AB6	B	221	234	Right-handed alpha
Helix 16	AB7	B	245	251	Right-handed alpha
Helix 17	AB8	B	281	296	Right-handed alpha
Helix 18	AB9	B	299	304	Right-handed 310
Helix 19	AC1	C	21	23	Right-handed 310
Helix 20	AC2	C	30	35	Right-handed alpha
Helix 21	AC3	C	57	73	Right-handed alpha
Helix 22	AC4	C	79	95	Right-handed alpha
Helix 23	AC5	C	164	179	Right-handed alpha
Helix 24	AC6	C	214	217	Right-handed 310
Helix 25	AC7	C	221	234	Right-handed alpha
Helix 26	AC8	C	245	251	Right-handed alpha
Helix 27	AC9	C	281	296	Right-handed alpha
Helix 28	AD1	C	299	304	Right-handed 310

There are 13 sheets in PDB entry 6GKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	10	13	anti-parallel
Strand 3	A	121	130	anti-parallel
Strand 4	A	100	109	anti-parallel
Strand 5	A	38	39	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	10	13	anti-parallel
Strand 3	A	121	130	anti-parallel
Strand 4	A	100	109	anti-parallel
Strand 5	A	42	47	anti-parallel
Strand 6	A	52	56	anti-parallel
Strand 7	A	306	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	26	first strand
Strand 2	B	24	26	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	183	187	anti-parallel
Strand 3	A	141	145	parallel
Strand 4	A	263	270	parallel
Strand 5	A	254	259	anti-parallel
Strand 6	A	200	205	anti-parallel
Strand 7	A	208	212	anti-parallel
Strand 8	A	239	242	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	183	187	anti-parallel
Strand 3	A	141	145	parallel
Strand 4	A	263	270	parallel
Strand 5	A	273	274	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	10	13	anti-parallel
Strand 3	B	121	130	anti-parallel
Strand 4	B	100	109	anti-parallel
Strand 5	B	38	39	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	10	13	anti-parallel
Strand 3	B	121	130	anti-parallel
Strand 4	B	100	109	anti-parallel
Strand 5	B	42	47	anti-parallel
Strand 6	B	52	56	anti-parallel
Strand 7	B	306	308	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	196	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	141	145	parallel
Strand 4	B	263	270	parallel
Strand 5	B	254	259	anti-parallel
Strand 6	B	200	205	anti-parallel
Strand 7	B	208	212	anti-parallel
Strand 8	B	239	242	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	196	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	141	145	parallel
Strand 4	B	263	270	parallel
Strand 5	B	273	274	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	19	first strand
Strand 2	C	10	13	anti-parallel
Strand 3	C	121	130	anti-parallel
Strand 4	C	100	109	anti-parallel
Strand 5	C	38	39	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	19	first strand
Strand 2	C	10	13	anti-parallel
Strand 3	C	121	130	anti-parallel
Strand 4	C	100	109	anti-parallel
Strand 5	C	42	47	anti-parallel
Strand 6	C	52	56	anti-parallel
Strand 7	C	306	308	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	196	first strand
Strand 2	C	183	187	anti-parallel
Strand 3	C	141	145	parallel
Strand 4	C	263	270	parallel
Strand 5	C	254	259	anti-parallel
Strand 6	C	200	205	anti-parallel
Strand 7	C	208	212	anti-parallel
Strand 8	C	239	242	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	196	first strand
Strand 2	C	183	187	anti-parallel
Strand 3	C	141	145	parallel
Strand 4	C	263	270	parallel
Strand 5	C	273	274	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GKR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GKR