Analysis of interatomic Contacts of Structural Units in PDB entry:
6GKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GKW entry

There is 1 chain in PDB entry 6GKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4ILE 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6GKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 25Right-handed alpha
Helix 2
AA2
A
45 49Right-handed 310
Helix 3
AA3
A
54 66Right-handed alpha
Helix 4
AA4
A
85 94Right-handed alpha
Helix 5
AA5
A
107 124Right-handed alpha
Helix 6
AA6
A
159 173Right-handed alpha
Helix 7
AA7
A
195 205Right-handed alpha
Helix 8
AA8
A
234 238Right-handed 310
Helix 9
AA9
A
239 261Right-handed alpha
Helix 10
AB1
A
268 289Right-handed alpha
Helix 11
AB2
A
301 312Right-handed alpha
Helix 12
AB3
A
320 327Right-handed alpha
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There are 4 sheets in PDB entry 6GKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
74 80anti-parallel
Strand 3
A
27 33parallel
Strand 4
A
100 102parallel
Strand 5
A
130 134parallel
Strand 6
A
143 146parallel
Strand 7
A
207 208parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
151 153anti-parallel
Strand 3
A
188 190anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
216 219anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 300first strand
Strand 2
A
334 339anti-parallel
Strand 3
A
348 353anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il