Analysis of interatomic Contacts of Structural Units in PDB entry:
6GKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GKY entry

There are 2 chains in PDB entry 6GKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7LYS 357
B
 GLN 7LYS 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6GKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 22Right-handed alpha
Helix 2
AA2
A
26 46Right-handed alpha
Helix 3
AA3
A
49 65Right-handed alpha
Helix 4
AA4
A
75 80Right-handed alpha
Helix 5
AA5
A
84 92Right-handed alpha
Helix 6
AA6
A
109 126Right-handed alpha
Helix 7
AA7
A
141 150Right-handed alpha
Helix 8
AA8
A
162 175Right-handed alpha
Helix 9
AA9
A
205 209Right-handed 310
Helix 10
AB1
A
211 222Right-handed alpha
Helix 11
AB2
A
268 272Right-handed 310
Helix 12
AB3
A
287 304Right-handed alpha
Helix 13
AB4
A
304 316Right-handed alpha
Helix 14
AB5
A
318 342Right-handed alpha
Helix 15
AB6
B
8 22Right-handed alpha
Helix 16
AB7
B
26 46Right-handed alpha
Helix 17
AB8
B
49 65Right-handed alpha
Helix 18
AB9
B
84 92Right-handed alpha
Helix 19
AC1
B
109 126Right-handed alpha
Helix 20
AC2
B
141 151Right-handed alpha
Helix 21
AC3
B
162 175Right-handed alpha
Helix 22
AC4
B
205 209Right-handed 310
Helix 23
AC5
B
211 221Right-handed alpha
Helix 24
AC6
B
268 273Right-handed 310
Helix 25
AC7
B
287 304Right-handed alpha
Helix 26
AC8
B
304 316Right-handed alpha
Helix 27
AC9
B
318 341Right-handed alpha
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There are 4 sheets in PDB entry 6GKY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
157 160parallel
Strand 3
A
133 136parallel
Strand 4
A
197 203parallel
Strand 5
A
223 236parallel
Strand 6
A
348 356anti-parallel
Strand 7
A
278 285anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
263 264anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 185first strand
Strand 2
B
157 160parallel
Strand 3
B
133 136parallel
Strand 4
B
197 203parallel
Strand 5
B
223 236parallel
Strand 6
B
348 356anti-parallel
Strand 7
B
278 285anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 242first strand
Strand 2
B
263 264anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il