Analysis of interatomic Contacts of Structural Units in PDB entry:
6GL1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GL1 entry

There are 7 chains in PDB entry 6GL1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	TRP 274
B	MET 1	MET 100
C	GLY 1	TRP 274
D	MET 1	MET 100
E	GLY 1	TRP 274
F	MET 1	MET 100
G	GLY 1	TRP 97

There are 27 helices in PDB entry 6GL1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	55	Right-handed 310
Helix 2	AA2	A	56	85	Right-handed alpha
Helix 3	AA3	A	137	150	Right-handed alpha
Helix 4	AA4	A	151	162	Right-handed alpha
Helix 5	AA5	A	162	175	Right-handed alpha
Helix 6	AA6	A	175	180	Right-handed alpha
Helix 7	AA7	A	253	255	Right-handed 310
Helix 8	AA8	C	49	55	Right-handed 310
Helix 9	AA9	C	56	85	Right-handed alpha
Helix 10	AB1	C	137	150	Right-handed alpha
Helix 11	AB2	C	151	162	Right-handed alpha
Helix 12	AB3	C	162	175	Right-handed alpha
Helix 13	AB4	C	175	180	Right-handed alpha
Helix 14	AB5	C	253	255	Right-handed 310
Helix 15	AB6	E	49	55	Right-handed 310
Helix 16	AB7	E	56	85	Right-handed alpha
Helix 17	AB8	E	137	150	Right-handed alpha
Helix 18	AB9	E	151	162	Right-handed alpha
Helix 19	AC1	E	162	175	Right-handed alpha
Helix 20	AC2	E	175	180	Right-handed alpha
Helix 21	AC3	E	253	255	Right-handed 310
Helix 22	AC4	G	49	53	Right-handed 310
Helix 23	AC5	G	56	85	Right-handed alpha
Helix 24	AC6	G	137	150	Right-handed alpha
Helix 25	AC7	G	151	162	Right-handed alpha
Helix 26	AC8	G	162	175	Right-handed alpha
Helix 27	AC9	G	175	180	Right-handed alpha

There are 28 sheets in PDB entry 6GL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	126	anti-parallel
Strand 8	A	133	135	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	192	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	227	230	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	192	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	219	first strand
Strand 2	A	257	262	anti-parallel
Strand 3	A	270	272	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	12	first strand
Strand 2	B	22	31	anti-parallel
Strand 3	B	63	71	anti-parallel
Strand 4	B	51	52	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	12	first strand
Strand 2	B	22	31	anti-parallel
Strand 3	B	63	71	anti-parallel
Strand 4	B	56	57	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	36	42	anti-parallel
Strand 3	B	79	85	anti-parallel
Strand 4	B	92	95	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	31	37	anti-parallel
Strand 3	C	21	28	anti-parallel
Strand 4	C	3	12	anti-parallel
Strand 5	C	94	103	anti-parallel
Strand 6	C	109	118	anti-parallel
Strand 7	C	121	126	anti-parallel
Strand 8	C	133	135	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	193	first strand
Strand 2	C	198	208	anti-parallel
Strand 3	C	241	250	anti-parallel
Strand 4	C	229	230	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	193	first strand
Strand 2	C	198	208	anti-parallel
Strand 3	C	241	250	anti-parallel
Strand 4	C	234	235	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	219	first strand
Strand 2	C	257	263	anti-parallel
Strand 3	C	270	272	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	12	first strand
Strand 2	D	22	31	anti-parallel
Strand 3	D	63	71	anti-parallel
Strand 4	D	51	52	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	12	first strand
Strand 2	D	22	31	anti-parallel
Strand 3	D	63	71	anti-parallel
Strand 4	D	56	57	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	36	42	anti-parallel
Strand 3	D	79	85	anti-parallel
Strand 4	D	92	95	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	47	first strand
Strand 2	E	31	37	anti-parallel
Strand 3	E	21	28	anti-parallel
Strand 4	E	3	12	anti-parallel
Strand 5	E	94	103	anti-parallel
Strand 6	E	109	118	anti-parallel
Strand 7	E	121	126	anti-parallel
Strand 8	E	133	135	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	193	first strand
Strand 2	E	198	208	anti-parallel
Strand 3	E	241	250	anti-parallel
Strand 4	E	228	230	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	193	first strand
Strand 2	E	198	208	anti-parallel
Strand 3	E	241	250	anti-parallel
Strand 4	E	234	235	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	213	219	first strand
Strand 2	E	257	263	anti-parallel
Strand 3	E	270	272	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	4	first strand
Strand 2	H	2	4	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	12	first strand
Strand 2	F	22	31	anti-parallel
Strand 3	F	63	71	anti-parallel
Strand 4	F	51	52	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	12	first strand
Strand 2	F	22	31	anti-parallel
Strand 3	F	63	71	anti-parallel
Strand 4	F	56	57	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	F	36	42	anti-parallel
Strand 3	F	79	85	anti-parallel
Strand 4	F	92	95	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	47	first strand
Strand 2	G	31	37	anti-parallel
Strand 3	G	21	28	anti-parallel
Strand 4	G	3	12	anti-parallel
Strand 5	G	94	103	anti-parallel
Strand 6	G	109	118	anti-parallel
Strand 7	G	121	126	anti-parallel
Strand 8	G	133	135	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	186	190	first strand
Strand 2	G	202	208	anti-parallel
Strand 3	G	241	245	anti-parallel
Strand 4	G	234	235	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	214	215	first strand
Strand 2	G	260	262	anti-parallel
Strand 3	G	270	271	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	22	31	anti-parallel
Strand 3	H	63	71	anti-parallel
Strand 4	H	51	52	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	22	31	anti-parallel
Strand 3	H	63	71	anti-parallel
Strand 4	H	56	57	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	46	first strand
Strand 2	H	37	42	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	92	95	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GL1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GL1