Analysis of interatomic Contacts of Structural Units in PDB entry:
6GL3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GL3 entry

There are 2 chains in PDB entry 6GL3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 323MET 797
B
 PHE 328ARG 798
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6GL3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
323 325Right-handed 310
Helix 2
AA2
A
326 340Right-handed alpha
Helix 3
AA3
A
344 360Right-handed alpha
Helix 4
AA4
A
382 386Right-handed 310
Helix 5
AA5
A
536 548Right-handed alpha
Helix 6
AA6
A
569 589Right-handed alpha
Helix 7
AA7
A
619 627Right-handed alpha
Helix 8
AA8
A
629 638Right-handed alpha
Helix 9
AA9
A
643 668Right-handed alpha
Helix 10
AB1
A
711 718Right-handed alpha
Helix 11
AB2
A
723 743Right-handed alpha
Helix 12
AB3
A
743 756Right-handed alpha
Helix 13
AB4
A
766 775Right-handed alpha
Helix 14
AB5
A
781 797Right-handed alpha
Helix 15
AB6
B
329 335Right-handed alpha
Helix 16
AB7
B
537 548Right-handed alpha
Helix 17
AB8
B
569 589Right-handed alpha
Helix 18
AB9
B
619 627Right-handed alpha
Helix 19
AC1
B
629 638Right-handed alpha
Helix 20
AC2
B
643 668Right-handed alpha
Helix 21
AC3
B
711 718Right-handed alpha
Helix 22
AC4
B
723 743Right-handed alpha
Helix 23
AC5
B
743 756Right-handed alpha
Helix 24
AC6
B
761 775Right-handed alpha
Helix 25
AC7
B
781 797Right-handed alpha
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There are 5 sheets in PDB entry 6GL3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 380first strand
Strand 2
A
397 405anti-parallel
Strand 3
A
387 388anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 380first strand
Strand 2
A
397 405anti-parallel
Strand 3
A
556 565anti-parallel
Strand 4
A
607 610anti-parallel
Strand 5
A
600 604anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 618first strand
Strand 2
A
677 680anti-parallel
Strand 3
A
685 687anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 380first strand
Strand 2
B
397 405anti-parallel
Strand 3
B
556 563anti-parallel
Strand 4
B
607 610anti-parallel
Strand 5
B
600 604anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
617 618first strand
Strand 2
B
677 679anti-parallel
Strand 3
B
685 687anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il