Analysis of interatomic Contacts of Structural Units in PDB entry:
6GL7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GL7 entry

There are 6 chains in PDB entry 6GL7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 98	VAL 197
D	ASP 39	THR 359
A	LEU 98	VAL 197
C	ASP 39	THR 359
F	LEU 29	GLU 505
E	LEU 29	GLU 505

There are 54 helices in PDB entry 6GL7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	113	116	Right-handed 310
Helix 2	AA2	B	139	151	Right-handed alpha
Helix 3	AA3	D	40	49	Right-handed alpha
Helix 4	AA4	D	50	63	Right-handed alpha
Helix 5	AA5	D	74	86	Right-handed alpha
Helix 6	AA6	D	103	111	Right-handed alpha
Helix 7	AA7	D	132	147	Right-handed alpha
Helix 8	AA8	D	159	170	Right-handed alpha
Helix 9	AA9	D	171	186	Right-handed alpha
Helix 10	AB1	D	196	211	Right-handed alpha
Helix 11	AB2	D	212	221	Right-handed alpha
Helix 12	AB3	D	226	235	Right-handed alpha
Helix 13	AB4	D	238	243	Right-handed alpha
Helix 14	AB5	D	250	261	Right-handed alpha
Helix 15	AB6	D	261	276	Right-handed alpha
Helix 16	AB7	D	285	288	Right-handed 310
Helix 17	AB8	D	289	300	Right-handed alpha
Helix 18	AB9	D	328	330	Right-handed 310
Helix 19	AC1	D	331	344	Right-handed alpha
Helix 20	AC2	D	345	357	Right-handed alpha
Helix 21	AC3	A	113	116	Right-handed 310
Helix 22	AC4	A	139	151	Right-handed alpha
Helix 23	AC5	C	40	49	Right-handed alpha
Helix 24	AC6	C	50	63	Right-handed alpha
Helix 25	AC7	C	74	86	Right-handed alpha
Helix 26	AC8	C	103	111	Right-handed alpha
Helix 27	AC9	C	132	147	Right-handed alpha
Helix 28	AD1	C	159	170	Right-handed alpha
Helix 29	AD2	C	171	186	Right-handed alpha
Helix 30	AD3	C	196	211	Right-handed alpha
Helix 31	AD4	C	212	221	Right-handed alpha
Helix 32	AD5	C	226	235	Right-handed alpha
Helix 33	AD6	C	238	243	Right-handed alpha
Helix 34	AD7	C	250	259	Right-handed alpha
Helix 35	AD8	C	261	275	Right-handed alpha
Helix 36	AD9	C	285	288	Right-handed 310
Helix 37	AE1	C	289	299	Right-handed alpha
Helix 38	AE2	C	328	330	Right-handed 310
Helix 39	AE3	C	331	344	Right-handed alpha
Helix 40	AE4	C	345	357	Right-handed alpha
Helix 41	AE5	F	102	112	Right-handed alpha
Helix 42	AE6	F	156	160	Right-handed 310
Helix 43	AE7	F	161	167	Right-handed alpha
Helix 44	AE8	F	190	197	Right-handed alpha
Helix 45	AE9	F	306	312	Right-handed alpha
Helix 46	AF1	F	428	433	Right-handed alpha
Helix 47	AF2	F	474	478	Right-handed 310
Helix 48	AF3	E	102	112	Right-handed alpha
Helix 49	AF4	E	156	160	Right-handed 310
Helix 50	AF5	E	161	167	Right-handed alpha
Helix 51	AF6	E	190	197	Right-handed alpha
Helix 52	AF7	E	306	312	Right-handed alpha
Helix 53	AF8	E	428	433	Right-handed alpha
Helix 54	AF9	E	474	478	Right-handed 310

There are 30 sheets in PDB entry 6GL7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	111	first strand
Strand 2	B	124	131	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	170	first strand
Strand 2	B	191	196	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	177	first strand
Strand 2	B	183	186	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	319	320	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	111	first strand
Strand 2	A	124	131	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	170	first strand
Strand 2	A	191	196	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	177	first strand
Strand 2	A	183	186	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	319	320	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	55	56	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	40	first strand
Strand 2	F	142	149	parallel
Strand 3	F	120	126	anti-parallel
Strand 4	F	67	68	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	52	first strand
Strand 2	F	94	97	anti-parallel
Strand 3	F	86	88	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	74	first strand
Strand 2	F	78	82	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	176	first strand
Strand 2	F	252	262	parallel
Strand 3	F	236	245	anti-parallel
Strand 4	F	202	207	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	187	first strand
Strand 2	F	222	225	anti-parallel
Strand 3	F	214	215	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	282	283	first strand
Strand 2	F	376	377	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	295	first strand
Strand 2	F	339	342	anti-parallel
Strand 3	F	329	332	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	352	357	first strand
Strand 2	F	369	374	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	419	424	first strand
Strand 2	F	464	468	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	441	443	first strand
Strand 2	F	480	489	anti-parallel
Strand 3	F	492	503	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	55	56	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	40	first strand
Strand 2	E	142	149	parallel
Strand 3	E	120	126	anti-parallel
Strand 4	E	67	68	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	52	first strand
Strand 2	E	94	97	anti-parallel
Strand 3	E	86	88	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	74	first strand
Strand 2	E	78	82	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	176	first strand
Strand 2	E	252	262	parallel
Strand 3	E	236	245	anti-parallel
Strand 4	E	202	207	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	187	first strand
Strand 2	E	222	225	anti-parallel
Strand 3	E	214	215	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	282	283	first strand
Strand 2	E	376	377	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	291	295	first strand
Strand 2	E	339	342	anti-parallel
Strand 3	E	329	332	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	352	357	first strand
Strand 2	E	369	374	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	419	424	first strand
Strand 2	E	464	468	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	441	443	first strand
Strand 2	E	480	489	anti-parallel
Strand 3	E	492	503	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GL7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GL7