Analysis of interatomic Contacts of Structural Units in PDB entry:
6GLX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GLX entry

There are 6 chains in PDB entry 6GLX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	TYR 139
B	SER 2	SER 138
C	GLN 5	CYS 228
D	GLN 1	SER 213
H	GLN 5	CYS 228
L	GLN 1	SER 213

There are 14 helices in PDB entry 6GLX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	33	Right-handed 310
Helix 2	AA2	A	117	121	Right-handed 310
Helix 3	AA3	B	29	33	Right-handed 310
Helix 4	AA4	B	117	121	Right-handed 310
Helix 5	AA5	C	62	67	Right-handed alpha
Helix 6	AA6	C	88	92	Right-handed 310
Helix 7	AA7	D	78	82	Right-handed 310
Helix 8	AA8	D	122	128	Right-handed alpha
Helix 9	AA9	D	182	189	Right-handed alpha
Helix 10	AB1	H	62	67	Right-handed alpha
Helix 11	AB2	H	88	92	Right-handed 310
Helix 12	AB3	L	78	82	Right-handed 310
Helix 13	AB4	L	122	128	Right-handed alpha
Helix 14	AB5	L	182	189	Right-handed alpha

There are 30 sheets in PDB entry 6GLX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	11	first strand
Strand 2	A	123	126	anti-parallel
Strand 3	A	35	41	anti-parallel
Strand 4	A	50	57	anti-parallel
Strand 5	A	61	68	anti-parallel
Strand 6	A	71	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	11	first strand
Strand 2	A	123	126	anti-parallel
Strand 3	A	35	41	anti-parallel
Strand 4	A	50	57	anti-parallel
Strand 5	A	61	68	anti-parallel
Strand 6	A	76	78	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	113	first strand
Strand 2	A	99	104	anti-parallel
Strand 3	A	89	95	anti-parallel
Strand 4	A	19	26	anti-parallel
Strand 5	A	130	138	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	11	first strand
Strand 2	B	123	127	anti-parallel
Strand 3	B	35	41	anti-parallel
Strand 4	B	50	57	anti-parallel
Strand 5	B	61	68	anti-parallel
Strand 6	B	71	72	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	11	first strand
Strand 2	B	123	127	anti-parallel
Strand 3	B	35	41	anti-parallel
Strand 4	B	50	57	anti-parallel
Strand 5	B	61	68	anti-parallel
Strand 6	B	76	78	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	113	first strand
Strand 2	B	99	104	anti-parallel
Strand 3	B	89	95	anti-parallel
Strand 4	B	19	26	anti-parallel
Strand 5	B	130	137	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	18	22	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	69	74	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	93	99	anti-parallel
Strand 4	C	36	41	anti-parallel
Strand 5	C	48	53	anti-parallel
Strand 6	C	60	61	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	93	99	anti-parallel
Strand 4	C	114	115	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	151	157	anti-parallel
Strand 3	C	188	194	anti-parallel
Strand 4	C	175	177	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	151	157	anti-parallel
Strand 3	C	188	194	anti-parallel
Strand 4	C	181	182	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	166	first strand
Strand 2	C	207	212	anti-parallel
Strand 3	C	217	222	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	102	107	parallel
Strand 3	D	84	92	anti-parallel
Strand 4	D	33	37	anti-parallel
Strand 5	D	44	47	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	102	107	parallel
Strand 3	D	84	92	anti-parallel
Strand 4	D	95	98	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	22	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	61	66	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	131	140	anti-parallel
Strand 3	D	173	181	anti-parallel
Strand 4	D	160	162	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	131	140	anti-parallel
Strand 3	D	173	181	anti-parallel
Strand 4	D	166	167	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	146	151	anti-parallel
Strand 3	D	192	198	anti-parallel
Strand 4	D	201	207	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	7	first strand
Strand 2	H	18	22	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	61	first strand
Strand 2	H	48	54	anti-parallel
Strand 3	H	35	41	anti-parallel
Strand 4	H	93	100	anti-parallel
Strand 5	H	112	115	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	61	first strand
Strand 2	H	48	54	anti-parallel
Strand 3	H	35	41	anti-parallel
Strand 4	H	93	100	anti-parallel
Strand 5	H	119	121	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	136	first strand
Strand 2	H	148	157	anti-parallel
Strand 3	H	188	196	anti-parallel
Strand 4	H	176	177	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	136	first strand
Strand 2	H	148	157	anti-parallel
Strand 3	H	188	196	anti-parallel
Strand 4	H	181	182	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	166	first strand
Strand 2	H	206	212	anti-parallel
Strand 3	H	217	223	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	4	first strand
Strand 2	L	95	99	parallel
Strand 3	L	84	92	anti-parallel
Strand 4	L	102	107	anti-parallel
Strand 5	L	9	13	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	4	first strand
Strand 2	L	95	99	parallel
Strand 3	L	84	92	anti-parallel
Strand 4	L	33	37	anti-parallel
Strand 5	L	44	47	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	22	first strand
Strand 2	L	69	74	anti-parallel
Strand 3	L	61	66	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	132	140	anti-parallel
Strand 3	L	173	180	anti-parallel
Strand 4	L	160	162	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	132	140	anti-parallel
Strand 3	L	173	180	anti-parallel
Strand 4	L	166	167	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	156	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	201	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GLX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GLX