Analysis of interatomic Contacts of Structural Units in PDB entry:
6GM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GM7 entry

There is 1 chain in PDB entry 6GM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 65VAL 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6GM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 77Right-handed alpha
Helix 2
AA2
A
92 99Right-handed alpha
Helix 3
AA3
A
100 104Right-handed 310
Helix 4
AA4
A
111 122Right-handed alpha
Helix 5
AA5
A
130 154Right-handed alpha
Helix 6
AA6
A
170 181Right-handed alpha
Helix 7
AA7
A
182 188Right-handed 310
Helix 8
AA8
A
193 203Right-handed alpha
Helix 9
AA9
A
204 211Right-handed alpha
Helix 10
AB1
A
213 215Right-handed 310
Helix 11
AB2
A
227 233Right-handed alpha
Helix 12
AB3
A
254 264Right-handed alpha
Helix 13
AB4
A
267 271Right-handed 310
Helix 14
AB5
A
295 310Right-handed alpha
Helix 15
AB6
A
340 349Right-handed alpha
Helix 16
AB7
A
391 404Right-handed alpha
Helix 17
AB8
A
420 424Right-handed 310
Helix 18
AB9
A
434 442Right-handed alpha
Helix 19
AC1
A
445 450Right-handed alpha
Helix 20
AC2
A
454 457Right-handed 310
Helix 21
AC3
A
458 468Right-handed alpha
Helix 22
AC4
A
474 482Right-handed alpha
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There are 4 sheets in PDB entry 6GM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
86 91parallel
Strand 3
A
217 223parallel
Strand 4
A
250 253parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
411 415parallel
Strand 3
A
381 390parallel
Strand 4
A
327 334anti-parallel
Strand 5
A
319 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
411 415parallel
Strand 3
A
381 390parallel
Strand 4
A
371 373anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
242 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il