Analysis of interatomic Contacts of Structural Units in PDB entry:
6GM8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GM8 entry

There are 2 chains in PDB entry 6GM8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	PRO 580
B	LYS 2	ALA 576

There are 66 helices in PDB entry 6GM8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	26	Right-handed alpha
Helix 2	AA2	A	62	64	Right-handed 310
Helix 3	AA3	A	76	92	Right-handed alpha
Helix 4	AA4	A	107	117	Right-handed alpha
Helix 5	AA5	A	128	131	Right-handed 310
Helix 6	AA6	A	151	162	Right-handed alpha
Helix 7	AA7	A	179	183	Right-handed 310
Helix 8	AA8	A	184	188	Right-handed 310
Helix 9	AA9	A	194	200	Right-handed alpha
Helix 10	AB1	A	210	220	Right-handed alpha
Helix 11	AB2	A	232	242	Right-handed 310
Helix 12	AB3	A	249	261	Right-handed alpha
Helix 13	AB4	A	268	290	Right-handed alpha
Helix 14	AB5	A	300	311	Right-handed alpha
Helix 15	AB6	A	312	318	Right-handed 310
Helix 16	AB7	A	323	339	Right-handed alpha
Helix 17	AB8	A	343	345	Right-handed 310
Helix 18	AB9	A	356	363	Right-handed alpha
Helix 19	AC1	A	381	391	Right-handed alpha
Helix 20	AC2	A	394	398	Right-handed 310
Helix 21	AC3	A	404	408	Right-handed 310
Helix 22	AC4	A	411	416	Right-handed alpha
Helix 23	AC5	A	417	419	Right-handed 310
Helix 24	AC6	A	421	436	Right-handed alpha
Helix 25	AC7	A	445	449	Right-handed 310
Helix 26	AC8	A	473	483	Right-handed alpha
Helix 27	AC9	A	484	488	Right-handed 310
Helix 28	AD1	A	502	506	Right-handed 310
Helix 29	AD2	A	521	537	Right-handed alpha
Helix 30	AD3	A	541	544	Right-handed 310
Helix 31	AD4	A	545	555	Right-handed alpha
Helix 32	AD5	A	561	569	Right-handed alpha
Helix 33	AD6	B	18	25	Right-handed alpha
Helix 34	AD7	B	62	64	Right-handed 310
Helix 35	AD8	B	76	92	Right-handed alpha
Helix 36	AD9	B	107	117	Right-handed alpha
Helix 37	AE1	B	129	131	Right-handed 310
Helix 38	AE2	B	151	161	Right-handed alpha
Helix 39	AE3	B	179	183	Right-handed 310
Helix 40	AE4	B	184	188	Right-handed 310
Helix 41	AE5	B	194	200	Right-handed alpha
Helix 42	AE6	B	210	220	Right-handed alpha
Helix 43	AE7	B	231	242	Right-handed 310
Helix 44	AE8	B	249	260	Right-handed alpha
Helix 45	AE9	B	268	290	Right-handed alpha
Helix 46	AF1	B	300	311	Right-handed alpha
Helix 47	AF2	B	312	318	Right-handed 310
Helix 48	AF3	B	323	333	Right-handed alpha
Helix 49	AF4	B	334	341	Right-handed alpha
Helix 50	AF5	B	343	345	Right-handed 310
Helix 51	AF6	B	356	363	Right-handed alpha
Helix 52	AF7	B	381	391	Right-handed alpha
Helix 53	AF8	B	394	398	Right-handed 310
Helix 54	AF9	B	404	408	Right-handed 310
Helix 55	AG1	B	411	416	Right-handed alpha
Helix 56	AG2	B	417	419	Right-handed 310
Helix 57	AG3	B	421	437	Right-handed alpha
Helix 58	AG4	B	445	449	Right-handed 310
Helix 59	AG5	B	473	483	Right-handed alpha
Helix 60	AG6	B	484	488	Right-handed 310
Helix 61	AG7	B	502	506	Right-handed 310
Helix 62	AG8	B	513	520	Right-handed alpha
Helix 63	AG9	B	521	537	Right-handed alpha
Helix 64	AH1	B	541	544	Right-handed 310
Helix 65	AH2	B	545	555	Right-handed alpha
Helix 66	AH3	B	561	569	Right-handed alpha

There are 12 sheets in PDB entry 6GM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	3	6	anti-parallel
Strand 3	A	71	73	parallel
Strand 4	A	50	53	anti-parallel
Strand 5	A	57	60	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	140	143	anti-parallel
Strand 3	A	205	207	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	174	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	267	first strand
Strand 2	A	224	229	parallel
Strand 3	A	347	353	parallel
Strand 4	A	377	380	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	493	497	parallel
Strand 3	A	465	472	parallel
Strand 4	A	454	460	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	369	first strand
Strand 2	A	372	373	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	4	6	anti-parallel
Strand 3	B	71	73	parallel
Strand 4	B	50	53	anti-parallel
Strand 5	B	57	60	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	140	143	anti-parallel
Strand 3	B	205	207	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	171	first strand
Strand 2	B	174	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	267	first strand
Strand 2	B	224	229	parallel
Strand 3	B	347	353	parallel
Strand 4	B	377	380	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	493	497	parallel
Strand 3	B	464	472	parallel
Strand 4	B	454	461	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	369	first strand
Strand 2	B	372	373	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GM8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GM8