Analysis of interatomic Contacts of Structural Units in PDB entry:
6GMA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GMA entry

There are 6 chains in PDB entry 6GMA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1455	LYS 1593
B	GLY 1455	LYS 1593
C	GLY 1455	LYS 1593
D	GLY 1455	LYS 1593
E	GLY 1455	ASN 1591
F	ALA 1456	LYS 1593

There are 12 helices in PDB entry 6GMA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1455	1487	Right-handed alpha
Helix 2	AA2	A	1535	1539	Right-handed 310
Helix 3	AA3	B	1456	1486	Right-handed alpha
Helix 4	AA4	B	1533	1538	Right-handed alpha
Helix 5	AA5	C	1456	1486	Right-handed alpha
Helix 6	AA6	C	1533	1538	Right-handed alpha
Helix 7	AA7	D	1456	1490	Right-handed alpha
Helix 8	AA8	D	1535	1539	Right-handed 310
Helix 9	AA9	E	1456	1486	Right-handed alpha
Helix 10	AB1	E	1535	1539	Right-handed 310
Helix 11	AB2	F	1457	1485	Right-handed alpha
Helix 12	AB3	F	1533	1538	Right-handed alpha

There are 9 sheets in PDB entry 6GMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1495	1496	first strand
Strand 2	B	1496	1497	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1506	1512	first strand
Strand 2	A	1517	1520	anti-parallel
Strand 3	A	1528	1530	anti-parallel
Strand 4	A	1581	1589	parallel
Strand 5	A	1554	1566	anti-parallel
Strand 6	A	1506	1512	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1506	1511	first strand
Strand 2	B	1518	1520	anti-parallel
Strand 3	B	1528	1530	anti-parallel
Strand 4	B	1581	1589	parallel
Strand 5	B	1554	1566	anti-parallel
Strand 6	B	1506	1511	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1495	1496	first strand
Strand 2	D	1496	1497	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1506	1511	first strand
Strand 2	C	1518	1520	anti-parallel
Strand 3	C	1528	1530	anti-parallel
Strand 4	C	1581	1589	parallel
Strand 5	C	1554	1566	anti-parallel
Strand 6	C	1506	1511	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1506	1511	first strand
Strand 2	D	1518	1520	anti-parallel
Strand 3	D	1528	1530	anti-parallel
Strand 4	D	1581	1589	parallel
Strand 5	D	1554	1566	anti-parallel
Strand 6	D	1506	1511	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1496	1497	first strand
Strand 2	F	1495	1496	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1506	1511	first strand
Strand 2	E	1518	1520	anti-parallel
Strand 3	E	1528	1530	anti-parallel
Strand 4	E	1581	1589	parallel
Strand 5	E	1554	1566	anti-parallel
Strand 6	E	1506	1511	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1506	1511	first strand
Strand 2	F	1518	1520	anti-parallel
Strand 3	F	1528	1530	anti-parallel
Strand 4	F	1581	1588	parallel
Strand 5	F	1554	1566	anti-parallel
Strand 6	F	1506	1511	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GMA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GMA