Analysis of interatomic Contacts of Structural Units in PDB entry:
6GMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GMC entry

There is 1 chain in PDB entry 6GMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6GMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
20 29Right-handed alpha
Helix 3
AA3
A
34 47Right-handed alpha
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
89 102Right-handed alpha
Helix 6
AA6
A
114 122Right-handed alpha
Helix 7
AA7
A
136 150Right-handed alpha
Helix 8
AA8
A
167 174Right-handed alpha
Helix 9
AA9
A
203 213Right-handed alpha
Helix 10
AB1
A
218 229Right-handed alpha
Helix 11
AB2
A
240 250Right-handed alpha
Helix 12
AB3
A
259 263Right-handed 310
Helix 13
AB4
A
270 283Right-handed alpha
Helix 14
AB5
A
296 306Right-handed alpha
Helix 15
AB6
A
314 348Right-handed alpha
Helix 16
AB7
A
351 355Right-handed 310
Helix 17
AB8
A
356 358Right-handed 310
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There are 3 sheets in PDB entry 6GMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
360 361anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
69 71anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
104 107parallel
Strand 3
A
126 131parallel
Strand 4
A
155 158parallel
Strand 5
A
233 238parallel
Strand 6
A
254 257parallel
Strand 7
A
287 291parallel
Strand 8
A
310 313parallel
Strand 9
A
75 77parallel
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