Analysis of interatomic Contacts of Structural Units in PDB entry:
6GME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GME entry

There are 2 chains in PDB entry 6GME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 UNK 1327VAL 1519
B
 UNK 1328VAL 1519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 6GME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1339 1350Right-handed alpha
Helix 2
AA2
A
1402 1406Right-handed 310
Helix 3
AA3
A
1407 1428Right-handed alpha
Helix 4
AA4
A
1434 1439Right-handed alpha
Helix 5
AA5
A
1439 1454Right-handed alpha
Helix 6
AA6
A
1503 1515Right-handed alpha
Helix 7
AA7
B
1339 1350Right-handed alpha
Helix 8
AA8
B
1402 1406Right-handed 310
Helix 9
AA9
B
1407 1428Right-handed alpha
Helix 10
AB1
B
1434 1439Right-handed alpha
Helix 11
AB2
B
1439 1454Right-handed alpha
Helix 12
AB3
B
1503 1515Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6GME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1330 1332first strand
Strand 2
A
1355 1359parallel
Strand 3
A
1367 1374anti-parallel
Strand 4
A
1377 1385anti-parallel
Strand 5
A
1397 1400parallel
Strand 6
B
1392 1393anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1392 1393first strand
Strand 2
B
1397 1400anti-parallel
Strand 3
B
1377 1385parallel
Strand 4
B
1367 1374anti-parallel
Strand 5
B
1355 1359anti-parallel
Strand 6
B
1330 1332parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1460 1464first strand
Strand 2
A
1471 1476anti-parallel
Strand 3
A
1483 1490anti-parallel
Strand 4
A
1493 1496anti-parallel
Strand 5
A
1499 1501anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1460 1464first strand
Strand 2
B
1471 1476anti-parallel
Strand 3
B
1483 1490anti-parallel
Strand 4
B
1493 1496anti-parallel
Strand 5
B
1499 1501anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il