Analysis of interatomic Contacts of Structural Units in PDB entry:
6GMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GMF entry

There is 1 chain in PDB entry 6GMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6GMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 15Right-handed alpha
Helix 2
AA2
A
15 27Right-handed alpha
Helix 3
AA3
A
42 52Right-handed alpha
Helix 4
AA4
A
58 65Right-handed 310
Helix 5
AA5
A
78 82Right-handed 310
Helix 6
AA6
A
85 95Right-handed alpha
Helix 7
AA7
A
99 106Right-handed alpha
Helix 8
AA8
A
106 120Right-handed alpha
Helix 9
AA9
A
129 133Right-handed alpha
Helix 10
AB1
A
135 146Right-handed alpha
Helix 11
AB2
A
149 151Right-handed 310
Helix 12
AB3
A
152 164Right-handed alpha
Helix 13
AB4
A
177 199Right-handed alpha
Helix 14
AB5
A
203 211Right-handed alpha
Helix 15
AB6
A
219 252Right-handed alpha
Helix 16
AB7
A
252 262Right-handed alpha
Helix 17
AB8
A
265 277Right-handed alpha
Helix 18
AB9
A
307 313Right-handed alpha
Helix 19
AC1
A
338 342Right-handed 310
Helix 20
AC2
A
345 364Right-handed alpha
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There are 4 sheets in PDB entry 6GMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
38 40anti-parallel
Strand 3
A
303 306parallel
Strand 4
A
285 287anti-parallel
Strand 5
A
56 57anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
389 391anti-parallel
Strand 3
A
368 369anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
216 217anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
296 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il