Analysis of interatomic Contacts of Structural Units in PDB entry:
6GMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GMG entry

There are 6 chains in PDB entry 6GMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1PRO 331
B
 SER 2PRO 331
C
 ASP 1GLY 5
C
 LYS 7MET 8
D
 ASP 1GLY 5
D
 LYS 7THR 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6GMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 42Right-handed alpha
Helix 2
AA2
A
53 61Right-handed alpha
Helix 3
AA3
A
63 73Right-handed alpha
Helix 4
AA4
A
86 97Right-handed alpha
Helix 5
AA5
A
104 116Right-handed alpha
Helix 6
AA6
A
118 138Right-handed alpha
Helix 7
AA7
A
142 157Right-handed alpha
Helix 8
AA8
A
159 164Right-handed 310
Helix 9
AA9
A
177 182Right-handed alpha
Helix 10
AB1
A
189 191Right-handed 310
Helix 11
AB2
A
211 218Right-handed alpha
Helix 12
AB3
A
266 269Right-handed 310
Helix 13
AB4
A
295 300Right-handed alpha
Helix 14
AB5
B
31 42Right-handed alpha
Helix 15
AB6
B
53 61Right-handed alpha
Helix 16
AB7
B
63 73Right-handed alpha
Helix 17
AB8
B
86 96Right-handed alpha
Helix 18
AB9
B
104 116Right-handed alpha
Helix 19
AC1
B
118 138Right-handed alpha
Helix 20
AC2
B
142 157Right-handed alpha
Helix 21
AC3
B
159 164Right-handed 310
Helix 22
AC4
B
177 182Right-handed alpha
Helix 23
AC5
B
189 191Right-handed 310
Helix 24
AC6
B
211 218Right-handed alpha
Helix 25
AC7
B
233 237Right-handed 310
Helix 26
AC8
B
266 269Right-handed 310
Helix 27
AC9
B
295 301Right-handed alpha
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There are 4 sheets in PDB entry 6GMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
289 294anti-parallel
Strand 3
A
271 275anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
307 316anti-parallel
Strand 3
A
193 202anti-parallel
Strand 4
A
254 260anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
289 294anti-parallel
Strand 3
B
271 275anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
307 316anti-parallel
Strand 3
B
193 202anti-parallel
Strand 4
B
255 260anti-parallel
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