Analysis of interatomic Contacts of Structural Units in PDB entry:
6GMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GMM entry

There is 1 chain in PDB entry 6GMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 48GLY 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6GMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 74Right-handed alpha
Helix 2
AA2
A
76 96Right-handed alpha
Helix 3
AA3
A
101 122Right-handed alpha
Helix 4
AA4
A
123 125Right-handed 310
Helix 5
AA5
A
172 191Right-handed alpha
Helix 6
AA6
A
232 251Right-handed alpha
Helix 7
AA7
A
254 259Right-handed 310
Helix 8
AA8
A
278 283Right-handed alpha
Helix 9
AA9
A
283 310Right-handed alpha
Helix 10
AB1
A
331 357Right-handed alpha
Helix 11
AB2
A
360 367Right-handed alpha
Helix 12
AB3
A
368 370Right-handed 310
Helix 13
AB4
A
371 376Right-handed alpha
Helix 14
AB5
A
398 412Right-handed alpha
Helix 15
AB6
A
413 432Right-handed alpha
Helix 16
AB7
A
432 454Right-handed alpha
Helix 17
AB8
A
456 461Right-handed alpha
Helix 18
AB9
A
483 498Right-handed alpha
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There are 3 sheets in PDB entry 6GMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
156 158anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
A
226 230anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 468first strand
Strand 2
A
478 482anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il