Analysis of interatomic Contacts of Structural Units in PDB entry:
6GMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GMO entry

There are 2 chains in PDB entry 6GMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 76	TYR 514
B	ALA 77	TYR 514

There are 43 helices in PDB entry 6GMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	92	Right-handed alpha
Helix 2	AA2	A	96	100	Right-handed 310
Helix 3	AA3	A	120	136	Right-handed alpha
Helix 4	AA4	A	173	193	Right-handed alpha
Helix 5	AA5	A	209	213	Right-handed 310
Helix 6	AA6	A	218	232	Right-handed alpha
Helix 7	AA7	A	234	242	Right-handed alpha
Helix 8	AA8	A	253	275	Right-handed alpha
Helix 9	AA9	A	290	296	Right-handed alpha
Helix 10	AB1	A	307	312	Right-handed 310
Helix 11	AB2	A	316	327	Right-handed alpha
Helix 12	AB3	A	345	351	Right-handed alpha
Helix 13	AB4	A	363	372	Right-handed alpha
Helix 14	AB5	A	393	409	Right-handed alpha
Helix 15	AB6	A	410	422	Right-handed alpha
Helix 16	AB7	A	425	440	Right-handed alpha
Helix 17	AB8	A	450	469	Right-handed alpha
Helix 18	AB9	A	472	475	Right-handed 310
Helix 19	AC1	A	476	486	Right-handed alpha
Helix 20	AC2	A	488	498	Right-handed alpha
Helix 21	AC3	A	507	512	Right-handed alpha
Helix 22	AC4	B	82	92	Right-handed alpha
Helix 23	AC5	B	96	100	Right-handed 310
Helix 24	AC6	B	120	136	Right-handed alpha
Helix 25	AC7	B	173	193	Right-handed alpha
Helix 26	AC8	B	209	213	Right-handed 310
Helix 27	AC9	B	218	232	Right-handed alpha
Helix 28	AD1	B	234	242	Right-handed alpha
Helix 29	AD2	B	253	275	Right-handed alpha
Helix 30	AD3	B	290	296	Right-handed alpha
Helix 31	AD4	B	300	302	Right-handed 310
Helix 32	AD5	B	307	312	Right-handed 310
Helix 33	AD6	B	316	326	Right-handed alpha
Helix 34	AD7	B	345	351	Right-handed alpha
Helix 35	AD8	B	363	372	Right-handed alpha
Helix 36	AD9	B	393	409	Right-handed alpha
Helix 37	AE1	B	410	422	Right-handed alpha
Helix 38	AE2	B	425	440	Right-handed alpha
Helix 39	AE3	B	450	469	Right-handed alpha
Helix 40	AE4	B	472	475	Right-handed 310
Helix 41	AE5	B	476	486	Right-handed alpha
Helix 42	AE6	B	488	499	Right-handed alpha
Helix 43	AE7	B	507	512	Right-handed alpha

There are 11 sheets in PDB entry 6GMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	142	first strand
Strand 2	A	145	151	anti-parallel
Strand 3	A	154	158	anti-parallel
Strand 4	A	164	167	anti-parallel
Strand 5	A	102	112	anti-parallel
Strand 6	A	197	200	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	142	first strand
Strand 2	A	145	151	anti-parallel
Strand 3	A	154	158	anti-parallel
Strand 4	A	164	167	anti-parallel
Strand 5	A	102	112	anti-parallel
Strand 6	A	245	249	anti-parallel
Strand 7	A	384	386	anti-parallel
Strand 8	A	378	380	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	284	285	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	334	first strand
Strand 2	A	337	340	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	445	first strand
Strand 2	A	448	449	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	142	first strand
Strand 2	B	145	151	anti-parallel
Strand 3	B	154	158	anti-parallel
Strand 4	B	164	167	anti-parallel
Strand 5	B	102	112	anti-parallel
Strand 6	B	197	200	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	142	first strand
Strand 2	B	145	151	anti-parallel
Strand 3	B	154	158	anti-parallel
Strand 4	B	164	167	anti-parallel
Strand 5	B	102	112	anti-parallel
Strand 6	B	245	249	anti-parallel
Strand 7	B	384	386	anti-parallel
Strand 8	B	378	380	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	284	285	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	375	376	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	334	first strand
Strand 2	B	337	340	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	445	first strand
Strand 2	B	448	449	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GMO