Analysis of interatomic Contacts of Structural Units in PDB entry:
6GN0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GN0 entry

There are 8 chains in PDB entry 6GN0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 3	ASN 241
B	MET 3	GLU 240
C	MET 3	TYR 243
D	MET 3	LEU 242
E	ASP 234	SER 430
F	ASP 234	SER 430
G	ASP 234	SER 430
H	ASP 234	LYS 431

There are 78 helices in PDB entry 6GN0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	19	Right-handed alpha
Helix 2	AA2	A	20	33	Right-handed alpha
Helix 3	AA3	A	39	68	Right-handed alpha
Helix 4	AA4	A	75	106	Right-handed alpha
Helix 5	AA5	A	106	111	Right-handed alpha
Helix 6	AA6	A	113	135	Right-handed alpha
Helix 7	AA7	A	137	162	Right-handed alpha
Helix 8	AA8	A	166	183	Right-handed alpha
Helix 9	AA9	A	186	204	Right-handed alpha
Helix 10	AB1	A	205	208	Right-handed 310
Helix 11	AB2	A	212	231	Right-handed alpha
Helix 12	AB3	B	4	19	Right-handed alpha
Helix 13	AB4	B	20	33	Right-handed alpha
Helix 14	AB5	B	39	70	Right-handed alpha
Helix 15	AB6	B	78	106	Right-handed alpha
Helix 16	AB7	B	106	111	Right-handed alpha
Helix 17	AB8	B	113	135	Right-handed alpha
Helix 18	AB9	B	137	162	Right-handed alpha
Helix 19	AC1	B	166	183	Right-handed alpha
Helix 20	AC2	B	186	204	Right-handed alpha
Helix 21	AC3	B	205	208	Right-handed 310
Helix 22	AC4	B	212	233	Right-handed alpha
Helix 23	AC5	C	5	18	Right-handed alpha
Helix 24	AC6	C	20	33	Right-handed alpha
Helix 25	AC7	C	39	69	Right-handed alpha
Helix 26	AC8	C	78	106	Right-handed alpha
Helix 27	AC9	C	106	111	Right-handed alpha
Helix 28	AD1	C	113	135	Right-handed alpha
Helix 29	AD2	C	137	162	Right-handed alpha
Helix 30	AD3	C	166	183	Right-handed alpha
Helix 31	AD4	C	186	204	Right-handed alpha
Helix 32	AD5	C	205	208	Right-handed 310
Helix 33	AD6	C	212	234	Right-handed alpha
Helix 34	AD7	D	4	19	Right-handed alpha
Helix 35	AD8	D	20	33	Right-handed alpha
Helix 36	AD9	D	39	71	Right-handed alpha
Helix 37	AE1	D	78	106	Right-handed alpha
Helix 38	AE2	D	106	111	Right-handed alpha
Helix 39	AE3	D	113	135	Right-handed alpha
Helix 40	AE4	D	137	162	Right-handed alpha
Helix 41	AE5	D	166	183	Right-handed alpha
Helix 42	AE6	D	186	204	Right-handed alpha
Helix 43	AE7	D	205	208	Right-handed 310
Helix 44	AE8	D	212	234	Right-handed alpha
Helix 45	AE9	E	235	243	Right-handed alpha
Helix 46	AF1	E	246	251	Right-handed alpha
Helix 47	AF2	E	262	275	Right-handed alpha
Helix 48	AF3	E	276	287	Right-handed alpha
Helix 49	AF4	E	291	309	Right-handed alpha
Helix 50	AF5	E	325	330	Right-handed 310
Helix 51	AF6	E	411	413	Right-handed 310
Helix 52	AF7	E	421	426	Right-handed alpha
Helix 53	AF8	F	235	245	Right-handed alpha
Helix 54	AF9	F	246	251	Right-handed alpha
Helix 55	AG1	F	252	256	Right-handed 310
Helix 56	AG2	F	262	275	Right-handed alpha
Helix 57	AG3	F	276	287	Right-handed alpha
Helix 58	AG4	F	291	308	Right-handed alpha
Helix 59	AG5	F	325	330	Right-handed 310
Helix 60	AG6	F	411	413	Right-handed 310
Helix 61	AG7	F	421	426	Right-handed alpha
Helix 62	AG8	G	235	245	Right-handed alpha
Helix 63	AG9	G	246	251	Right-handed alpha
Helix 64	AH1	G	262	275	Right-handed alpha
Helix 65	AH2	G	276	287	Right-handed alpha
Helix 66	AH3	G	291	305	Right-handed alpha
Helix 67	AH4	G	325	330	Right-handed 310
Helix 68	AH5	G	411	413	Right-handed 310
Helix 69	AH6	G	421	426	Right-handed alpha
Helix 70	AH7	H	235	245	Right-handed alpha
Helix 71	AH8	H	246	251	Right-handed alpha
Helix 72	AH9	H	262	275	Right-handed alpha
Helix 73	AI1	H	276	286	Right-handed alpha
Helix 74	AI2	H	293	307	Right-handed alpha
Helix 75	AI3	H	325	329	Right-handed 310
Helix 76	AI4	H	349	353	Right-handed 310
Helix 77	AI5	H	411	413	Right-handed 310
Helix 78	AI6	H	421	426	Right-handed alpha

There are 8 sheets in PDB entry 6GN0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	315	321	first strand
Strand 2	E	358	364	anti-parallel
Strand 3	E	403	409	parallel
Strand 4	E	389	396	anti-parallel
Strand 5	E	335	337	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	342	344	first strand
Strand 2	E	382	384	anti-parallel
Strand 3	E	368	369	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	315	319	first strand
Strand 2	F	358	364	anti-parallel
Strand 3	F	403	409	parallel
Strand 4	F	389	397	anti-parallel
Strand 5	F	335	337	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	342	345	first strand
Strand 2	F	381	384	anti-parallel
Strand 3	F	368	369	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	315	321	first strand
Strand 2	G	358	364	anti-parallel
Strand 3	G	403	409	parallel
Strand 4	G	389	396	anti-parallel
Strand 5	G	335	337	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	342	345	first strand
Strand 2	G	381	384	anti-parallel
Strand 3	G	368	369	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	315	321	first strand
Strand 2	H	358	364	anti-parallel
Strand 3	H	403	409	parallel
Strand 4	H	389	397	anti-parallel
Strand 5	H	335	337	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	342	345	first strand
Strand 2	H	381	384	anti-parallel
Strand 3	H	368	369	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GN0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GN0