Analysis of interatomic Contacts of Structural Units in PDB entry:
6GN6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GN6 entry

There are 6 chains in PDB entry 6GN6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	ASP 424
B	THR 4	ASP 424
C	THR 4	ASP 424
D	HIS 0	ASP 424
E	THR 4	ASP 424
F	GLU -3	ASP 424

There are 93 helices in PDB entry 6GN6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	10	Right-handed alpha
Helix 2	AA2	A	10	17	Right-handed alpha
Helix 3	AA3	A	25	29	Right-handed 310
Helix 4	AA4	A	35	40	Right-handed alpha
Helix 5	AA5	A	43	53	Right-handed alpha
Helix 6	AA6	A	60	71	Right-handed alpha
Helix 7	AA7	A	97	101	Right-handed 310
Helix 8	AA8	A	106	118	Right-handed alpha
Helix 9	AA9	A	149	153	Right-handed 310
Helix 10	AB1	A	158	174	Right-handed alpha
Helix 11	AB2	A	193	197	Right-handed 310
Helix 12	AB3	A	198	210	Right-handed alpha
Helix 13	AB4	A	278	292	Right-handed alpha
Helix 14	AB5	A	309	327	Right-handed alpha
Helix 15	AB6	A	328	330	Right-handed 310
Helix 16	AB7	A	391	395	Right-handed 310
Helix 17	AB8	B	5	10	Right-handed alpha
Helix 18	AB9	B	10	17	Right-handed alpha
Helix 19	AC1	B	25	29	Right-handed 310
Helix 20	AC2	B	35	40	Right-handed alpha
Helix 21	AC3	B	47	54	Right-handed alpha
Helix 22	AC4	B	60	71	Right-handed alpha
Helix 23	AC5	B	97	101	Right-handed 310
Helix 24	AC6	B	106	118	Right-handed alpha
Helix 25	AC7	B	149	153	Right-handed 310
Helix 26	AC8	B	158	176	Right-handed alpha
Helix 27	AC9	B	193	197	Right-handed 310
Helix 28	AD1	B	198	210	Right-handed alpha
Helix 29	AD2	B	278	292	Right-handed alpha
Helix 30	AD3	B	309	327	Right-handed alpha
Helix 31	AD4	B	328	330	Right-handed 310
Helix 32	AD5	B	391	395	Right-handed 310
Helix 33	AD6	C	5	10	Right-handed alpha
Helix 34	AD7	C	10	17	Right-handed alpha
Helix 35	AD8	C	25	29	Right-handed 310
Helix 36	AD9	C	35	40	Right-handed alpha
Helix 37	AE1	C	43	53	Right-handed alpha
Helix 38	AE2	C	60	71	Right-handed alpha
Helix 39	AE3	C	97	101	Right-handed 310
Helix 40	AE4	C	106	118	Right-handed alpha
Helix 41	AE5	C	149	153	Right-handed 310
Helix 42	AE6	C	158	176	Right-handed alpha
Helix 43	AE7	C	193	197	Right-handed 310
Helix 44	AE8	C	198	210	Right-handed alpha
Helix 45	AE9	C	278	292	Right-handed alpha
Helix 46	AF1	C	309	327	Right-handed alpha
Helix 47	AF2	C	328	330	Right-handed 310
Helix 48	AF3	C	391	395	Right-handed 310
Helix 49	AF4	D	2	17	Right-handed alpha
Helix 50	AF5	D	25	29	Right-handed 310
Helix 51	AF6	D	35	40	Right-handed alpha
Helix 52	AF7	D	43	53	Right-handed alpha
Helix 53	AF8	D	60	72	Right-handed alpha
Helix 54	AF9	D	97	101	Right-handed 310
Helix 55	AG1	D	106	118	Right-handed alpha
Helix 56	AG2	D	149	153	Right-handed 310
Helix 57	AG3	D	158	174	Right-handed alpha
Helix 58	AG4	D	193	197	Right-handed 310
Helix 59	AG5	D	198	210	Right-handed alpha
Helix 60	AG6	D	278	291	Right-handed alpha
Helix 61	AG7	D	309	327	Right-handed alpha
Helix 62	AG8	D	328	330	Right-handed 310
Helix 63	AG9	D	391	395	Right-handed 310
Helix 64	AH1	E	5	17	Right-handed alpha
Helix 65	AH2	E	25	29	Right-handed 310
Helix 66	AH3	E	35	40	Right-handed alpha
Helix 67	AH4	E	43	54	Right-handed alpha
Helix 68	AH5	E	60	71	Right-handed alpha
Helix 69	AH6	E	97	101	Right-handed 310
Helix 70	AH7	E	106	118	Right-handed alpha
Helix 71	AH8	E	149	153	Right-handed 310
Helix 72	AH9	E	158	176	Right-handed alpha
Helix 73	AI1	E	193	197	Right-handed 310
Helix 74	AI2	E	198	210	Right-handed alpha
Helix 75	AI3	E	278	292	Right-handed alpha
Helix 76	AI4	E	309	327	Right-handed alpha
Helix 77	AI5	E	328	330	Right-handed 310
Helix 78	AI6	E	391	395	Right-handed 310
Helix 79	AI7	F	-2	17	Right-handed alpha
Helix 80	AI8	F	25	29	Right-handed 310
Helix 81	AI9	F	35	40	Right-handed alpha
Helix 82	AJ1	F	43	54	Right-handed alpha
Helix 83	AJ2	F	60	71	Right-handed alpha
Helix 84	AJ3	F	97	101	Right-handed 310
Helix 85	AJ4	F	106	118	Right-handed alpha
Helix 86	AJ5	F	149	153	Right-handed 310
Helix 87	AJ6	F	158	176	Right-handed alpha
Helix 88	AJ7	F	193	197	Right-handed 310
Helix 89	AJ8	F	198	210	Right-handed alpha
Helix 90	AJ9	F	278	291	Right-handed alpha
Helix 91	AK1	F	309	327	Right-handed alpha
Helix 92	AK2	F	328	330	Right-handed 310
Helix 93	AK3	F	391	395	Right-handed 310

There are 18 sheets in PDB entry 6GN6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	215	first strand
Strand 2	A	182	186	parallel
Strand 3	A	121	127	parallel
Strand 4	A	75	81	parallel
Strand 5	A	18	22	parallel
Strand 6	A	295	300	parallel
Strand 7	A	258	262	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	349	first strand
Strand 2	A	352	357	anti-parallel
Strand 3	A	416	422	anti-parallel
Strand 4	A	374	379	anti-parallel
Strand 5	A	384	385	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	368	first strand
Strand 2	A	400	403	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	182	186	parallel
Strand 3	B	121	127	parallel
Strand 4	B	75	81	parallel
Strand 5	B	18	22	parallel
Strand 6	B	295	300	parallel
Strand 7	B	258	262	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	349	first strand
Strand 2	B	352	357	anti-parallel
Strand 3	B	416	422	anti-parallel
Strand 4	B	374	379	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	368	first strand
Strand 2	B	400	403	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	215	first strand
Strand 2	C	182	186	parallel
Strand 3	C	121	127	parallel
Strand 4	C	75	81	parallel
Strand 5	C	18	22	parallel
Strand 6	C	295	300	parallel
Strand 7	C	258	262	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	349	first strand
Strand 2	C	352	357	anti-parallel
Strand 3	C	416	422	anti-parallel
Strand 4	C	374	379	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	368	first strand
Strand 2	C	400	403	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	215	first strand
Strand 2	D	182	186	parallel
Strand 3	D	121	127	parallel
Strand 4	D	75	81	parallel
Strand 5	D	18	22	parallel
Strand 6	D	295	300	parallel
Strand 7	D	258	262	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	349	first strand
Strand 2	D	352	357	anti-parallel
Strand 3	D	416	422	anti-parallel
Strand 4	D	374	379	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	368	first strand
Strand 2	D	400	403	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	215	first strand
Strand 2	E	182	186	parallel
Strand 3	E	121	127	parallel
Strand 4	E	75	81	parallel
Strand 5	E	18	22	parallel
Strand 6	E	295	300	parallel
Strand 7	E	258	262	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	344	349	first strand
Strand 2	E	352	357	anti-parallel
Strand 3	E	416	422	anti-parallel
Strand 4	E	374	379	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	365	368	first strand
Strand 2	E	400	403	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	214	215	first strand
Strand 2	F	182	186	parallel
Strand 3	F	121	127	parallel
Strand 4	F	75	81	parallel
Strand 5	F	18	22	parallel
Strand 6	F	295	300	parallel
Strand 7	F	258	262	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	344	349	first strand
Strand 2	F	352	357	anti-parallel
Strand 3	F	416	422	anti-parallel
Strand 4	F	374	379	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	365	368	first strand
Strand 2	F	400	403	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GN6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GN6