Analysis of interatomic Contacts of Structural Units in PDB entry:
6GNE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GNE entry

There are 2 chains in PDB entry 6GNE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 23ARG 515
B
 SER 23ALA 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6GNE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 57Right-handed alpha
Helix 2
AA2
A
72 74Right-handed 310
Helix 3
AA3
A
131 150Right-handed alpha
Helix 4
AA4
A
161 166Right-handed alpha
Helix 5
AA5
A
166 175Right-handed alpha
Helix 6
AA6
A
176 179Right-handed 310
Helix 7
AA7
A
201 205Right-handed 310
Helix 8
AA8
A
209 214Right-handed alpha
Helix 9
AA9
A
229 238Right-handed alpha
Helix 10
AB1
A
245 254Right-handed alpha
Helix 11
AB2
A
254 259Right-handed alpha
Helix 12
AB3
A
261 268Right-handed alpha
Helix 13
AB4
A
301 316Right-handed alpha
Helix 14
AB5
A
334 337Right-handed 310
Helix 15
AB6
A
338 352Right-handed alpha
Helix 16
AB7
A
364 378Right-handed alpha
Helix 17
AB8
A
391 402Right-handed alpha
Helix 18
AB9
A
416 424Right-handed alpha
Helix 19
AC1
A
433 440Right-handed alpha
Helix 20
AC2
A
462 480Right-handed alpha
Helix 21
AC3
A
480 493Right-handed alpha
Helix 22
AC4
A
498 515Right-handed alpha
Helix 23
AC5
B
41 57Right-handed alpha
Helix 24
AC6
B
72 76Right-handed 310
Helix 25
AC7
B
131 150Right-handed alpha
Helix 26
AC8
B
162 165Right-handed 310
Helix 27
AC9
B
166 175Right-handed alpha
Helix 28
AD1
B
176 179Right-handed 310
Helix 29
AD2
B
201 205Right-handed 310
Helix 30
AD3
B
209 214Right-handed alpha
Helix 31
AD4
B
229 238Right-handed alpha
Helix 32
AD5
B
245 254Right-handed alpha
Helix 33
AD6
B
254 259Right-handed alpha
Helix 34
AD7
B
261 268Right-handed alpha
Helix 35
AD8
B
301 316Right-handed alpha
Helix 36
AD9
B
334 337Right-handed 310
Helix 37
AE1
B
338 352Right-handed alpha
Helix 38
AE2
B
364 378Right-handed alpha
Helix 39
AE3
B
391 402Right-handed alpha
Helix 40
AE4
B
416 424Right-handed alpha
Helix 41
AE5
B
433 440Right-handed alpha
Helix 42
AE6
B
462 480Right-handed alpha
Helix 43
AE7
B
480 493Right-handed alpha
Helix 44
AE8
B
498 515Right-handed alpha
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There are 7 sheets in PDB entry 6GNE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 90first strand
Strand 2
A
93 104anti-parallel
Strand 3
A
107 115anti-parallel
Strand 4
A
60 66parallel
Strand 5
A
26 30parallel
Strand 6
A
156 160parallel
Strand 7
A
184 189parallel
Strand 8
A
240 243parallel
Strand 9
A
272 274parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
227 228anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 387first strand
Strand 2
A
355 361parallel
Strand 3
A
326 332parallel
Strand 4
A
404 407parallel
Strand 5
A
427 431parallel
Strand 6
A
456 458parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
93 104anti-parallel
Strand 3
B
86 90anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
93 104anti-parallel
Strand 3
B
107 114anti-parallel
Strand 4
B
60 66parallel
Strand 5
B
26 30parallel
Strand 6
B
156 160parallel
Strand 7
B
184 189parallel
Strand 8
B
240 243parallel
Strand 9
B
272 274parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 199first strand
Strand 2
B
227 228anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 387first strand
Strand 2
B
355 361parallel
Strand 3
B
326 332parallel
Strand 4
B
404 407parallel
Strand 5
B
427 431parallel
Strand 6
B
456 458parallel
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