Analysis of interatomic Contacts of Structural Units in PDB entry:
6GNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GNF entry

There are 3 chains in PDB entry 6GNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ASN 521
B
 LEU -6ASN 521
C
 SER -8ARG 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 6GNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 35Right-handed alpha
Helix 2
AA2
A
86 91Right-handed alpha
Helix 3
AA3
A
111 125Right-handed alpha
Helix 4
AA4
A
125 130Right-handed alpha
Helix 5
AA5
A
133 137Right-handed 310
Helix 6
AA6
A
152 155Right-handed 310
Helix 7
AA7
A
156 165Right-handed alpha
Helix 8
AA8
A
166 169Right-handed 310
Helix 9
AA9
A
190 198Right-handed 310
Helix 10
AB1
A
200 202Right-handed 310
Helix 11
AB2
A
203 207Right-handed alpha
Helix 12
AB3
A
237 245Right-handed alpha
Helix 13
AB4
A
252 262Right-handed alpha
Helix 14
AB5
A
269 277Right-handed alpha
Helix 15
AB6
A
306 322Right-handed alpha
Helix 16
AB7
A
340 343Right-handed 310
Helix 17
AB8
A
344 351Right-handed alpha
Helix 18
AB9
A
351 356Right-handed alpha
Helix 19
AC1
A
357 359Right-handed 310
Helix 20
AC2
A
369 383Right-handed alpha
Helix 21
AC3
A
393 404Right-handed alpha
Helix 22
AC4
A
418 426Right-handed alpha
Helix 23
AC5
A
436 442Right-handed alpha
Helix 24
AC6
A
464 484Right-handed alpha
Helix 25
AC7
A
488 501Right-handed alpha
Helix 26
AC8
A
505 521Right-handed alpha
Helix 27
AC9
B
18 35Right-handed alpha
Helix 28
AD1
B
86 91Right-handed alpha
Helix 29
AD2
B
111 125Right-handed alpha
Helix 30
AD3
B
125 130Right-handed alpha
Helix 31
AD4
B
133 137Right-handed 310
Helix 32
AD5
B
152 155Right-handed 310
Helix 33
AD6
B
156 165Right-handed alpha
Helix 34
AD7
B
166 169Right-handed 310
Helix 35
AD8
B
190 198Right-handed 310
Helix 36
AD9
B
200 202Right-handed 310
Helix 37
AE1
B
203 207Right-handed alpha
Helix 38
AE2
B
237 245Right-handed alpha
Helix 39
AE3
B
252 262Right-handed alpha
Helix 40
AE4
B
269 277Right-handed alpha
Helix 41
AE5
B
306 322Right-handed alpha
Helix 42
AE6
B
340 343Right-handed 310
Helix 43
AE7
B
344 351Right-handed alpha
Helix 44
AE8
B
351 356Right-handed alpha
Helix 45
AE9
B
357 359Right-handed 310
Helix 46
AF1
B
369 383Right-handed alpha
Helix 47
AF2
B
393 404Right-handed alpha
Helix 48
AF3
B
418 426Right-handed alpha
Helix 49
AF4
B
436 442Right-handed alpha
Helix 50
AF5
B
464 484Right-handed alpha
Helix 51
AF6
B
488 501Right-handed alpha
Helix 52
AF7
B
505 521Right-handed alpha
Helix 53
AF8
C
18 35Right-handed alpha
Helix 54
AF9
C
86 91Right-handed alpha
Helix 55
AG1
C
111 125Right-handed alpha
Helix 56
AG2
C
125 130Right-handed alpha
Helix 57
AG3
C
133 137Right-handed 310
Helix 58
AG4
C
152 155Right-handed 310
Helix 59
AG5
C
156 165Right-handed alpha
Helix 60
AG6
C
166 169Right-handed 310
Helix 61
AG7
C
190 198Right-handed 310
Helix 62
AG8
C
200 202Right-handed 310
Helix 63
AG9
C
203 207Right-handed alpha
Helix 64
AH1
C
237 245Right-handed alpha
Helix 65
AH2
C
252 262Right-handed alpha
Helix 66
AH3
C
269 277Right-handed alpha
Helix 67
AH4
C
306 322Right-handed alpha
Helix 68
AH5
C
340 343Right-handed 310
Helix 69
AH6
C
344 351Right-handed alpha
Helix 70
AH7
C
351 356Right-handed alpha
Helix 71
AH8
C
357 359Right-handed 310
Helix 72
AH9
C
369 383Right-handed alpha
Helix 73
AI1
C
393 404Right-handed alpha
Helix 74
AI2
C
418 426Right-handed alpha
Helix 75
AI3
C
435 442Right-handed alpha
Helix 76
AI4
C
464 484Right-handed alpha
Helix 77
AI5
C
488 501Right-handed alpha
Helix 78
AI6
C
505 521Right-handed alpha
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There are 9 sheets in PDB entry 6GNF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 62first strand
Strand 2
A
65 76anti-parallel
Strand 3
A
79 85anti-parallel
Strand 4
A
37 43parallel
Strand 5
A
3 7parallel
Strand 6
A
146 150parallel
Strand 7
A
175 180parallel
Strand 8
A
247 250parallel
Strand 9
A
278 280parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
226 236anti-parallel
Strand 3
A
208 214anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
361 365parallel
Strand 3
A
332 336parallel
Strand 4
A
406 409parallel
Strand 5
A
429 432parallel
Strand 6
A
448 449parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 62first strand
Strand 2
B
65 76anti-parallel
Strand 3
B
79 85anti-parallel
Strand 4
B
37 43parallel
Strand 5
B
3 7parallel
Strand 6
B
146 150parallel
Strand 7
B
175 180parallel
Strand 8
B
247 250parallel
Strand 9
B
278 280parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
233 236anti-parallel
Strand 3
B
208 210anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 389first strand
Strand 2
B
361 365parallel
Strand 3
B
332 336parallel
Strand 4
B
406 409parallel
Strand 5
B
429 432parallel
Strand 6
B
448 449parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 62first strand
Strand 2
C
65 76anti-parallel
Strand 3
C
79 85anti-parallel
Strand 4
C
37 43parallel
Strand 5
C
3 7parallel
Strand 6
C
146 150parallel
Strand 7
C
175 180parallel
Strand 8
C
247 250parallel
Strand 9
C
278 280parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 189first strand
Strand 2
C
232 236anti-parallel
Strand 3
C
208 211anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
386 389first strand
Strand 2
C
361 365parallel
Strand 3
C
332 336parallel
Strand 4
C
406 409parallel
Strand 5
C
429 432parallel
Strand 6
C
448 449parallel
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